A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.3
nTPM
Monaco:
37.5
nTPM
Schmiedel:
113.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.3
HPA sample
nTPM
Classical monocyte nTPM: 1.6
Samples: 6
Max nTPM: 1.8
Min nTPM: 1.2
P10809_1003
1.6
P10809_1020
1.8
P10809_1039
1.2
P10809_1058
1.3
P10809_1080
1.7
P10809_1107
1.8
Intermediate monocyte nTPM: 2.3
Samples: 6
Max nTPM: 2.9
Min nTPM: 1.5
P10809_1004
2.7
P10809_1023
1.5
P10809_1042
2.1
P10809_1061
2.9
P10809_1081
1.9
P10809_1108
2.8
Non-classical monocyte nTPM: 2.1
Samples: 5
Max nTPM: 3.0
Min nTPM: 0.3
P10809_1005
2.9
P10809_1053
1.8
P10809_1072
0.3
P10809_1082
2.4
P10809_1109
3.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.5
Monaco sample
nTPM
Classical monocyte nTPM: 27.9
Samples: 4
Max nTPM: 32.7
Min nTPM: 23.1
RHH5313_R3680
26.5
RHH5221_R3593
32.7
RHH5250_R3622
23.1
RHH5279_R3651
29.2
Intermediate monocyte nTPM: 37.5
Samples: 4
Max nTPM: 51.3
Min nTPM: 20.5
RHH5314_R3681
20.5
RHH5222_R3594
51.3
RHH5251_R3623
45.1
RHH5280_R3652
33.1
Non-classical monocyte nTPM: 36.4
Samples: 4
Max nTPM: 43.0
Min nTPM: 29.0
RHH5315_R3682
30.9
RHH5223_R3595
43.0
RHH5252_R3624
42.5
RHH5281_R3653
29.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
113.3
Schmiedel sample id
TPM
Classical monocyte TPM: 107.2
Samples: 91
Max TPM: 157.0
Min TPM: 72.2
MONOCYTES_1
157.0
MONOCYTES_2
154.7
MONOCYTES_3
143.9
MONOCYTES_4
140.7
MONOCYTES_5
139.7
MONOCYTES_6
139.3
MONOCYTES_7
137.4
MONOCYTES_8
137.0
MONOCYTES_9
133.4
MONOCYTES_10
131.1
MONOCYTES_11
130.5
MONOCYTES_12
130.2
MONOCYTES_13
130.2
MONOCYTES_14
129.8
MONOCYTES_15
127.4
MONOCYTES_16
125.1
MONOCYTES_17
124.4
MONOCYTES_18
122.1
MONOCYTES_19
122.0
MONOCYTES_20
120.3
MONOCYTES_21
118.6
MONOCYTES_22
118.5
MONOCYTES_23
118.3
MONOCYTES_24
117.5
MONOCYTES_25
116.0
MONOCYTES_26
114.9
MONOCYTES_27
114.7
MONOCYTES_28
114.4
MONOCYTES_29
114.1
MONOCYTES_30
113.8
MONOCYTES_31
113.6
MONOCYTES_32
113.1
MONOCYTES_33
112.1
MONOCYTES_34
111.1
MONOCYTES_35
110.0
MONOCYTES_36
109.9
MONOCYTES_37
109.8
MONOCYTES_38
109.5
MONOCYTES_39
108.7
MONOCYTES_40
107.5
MONOCYTES_41
106.9
MONOCYTES_42
106.0
MONOCYTES_43
105.7
MONOCYTES_44
104.5
MONOCYTES_45
104.4
MONOCYTES_46
103.7
MONOCYTES_47
103.7
MONOCYTES_48
103.6
MONOCYTES_49
102.8
MONOCYTES_50
102.7
MONOCYTES_51
102.2
MONOCYTES_52
100.7
MONOCYTES_53
100.6
MONOCYTES_54
99.4
MONOCYTES_55
99.3
MONOCYTES_56
99.3
MONOCYTES_57
99.0
MONOCYTES_58
98.7
MONOCYTES_59
98.5
MONOCYTES_60
97.8
MONOCYTES_61
97.5
MONOCYTES_62
96.8
MONOCYTES_63
96.6
MONOCYTES_64
95.9
MONOCYTES_65
95.6
MONOCYTES_66
95.3
MONOCYTES_67
94.4
MONOCYTES_68
94.3
MONOCYTES_69
94.1
MONOCYTES_70
93.3
MONOCYTES_71
93.1
MONOCYTES_72
92.6
MONOCYTES_73
92.5
MONOCYTES_74
91.5
MONOCYTES_75
91.2
MONOCYTES_76
91.1
MONOCYTES_77
90.9
MONOCYTES_78
90.0
MONOCYTES_79
89.8
MONOCYTES_80
89.6
MONOCYTES_81
88.4
MONOCYTES_82
88.1
MONOCYTES_83
87.7
MONOCYTES_84
86.7
MONOCYTES_85
85.3
MONOCYTES_86
82.6
MONOCYTES_87
79.3
MONOCYTES_88
78.7
MONOCYTES_89
78.3
MONOCYTES_90
75.6
MONOCYTES_91
72.2
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Non-classical monocyte TPM: 113.3
Samples: 90
Max TPM: 174.3
Min TPM: 54.0
M2_1
174.3
M2_2
162.0
M2_3
158.3
M2_4
156.6
M2_5
154.6
M2_6
153.3
M2_7
151.9
M2_8
148.5
M2_9
142.8
M2_10
142.0
M2_11
139.9
M2_12
139.6
M2_13
137.4
M2_14
137.2
M2_15
132.2
M2_16
130.2
M2_17
126.9
M2_18
124.8
M2_19
123.7
M2_20
123.7
M2_21
123.4
M2_22
122.7
M2_23
122.6
M2_24
122.2
M2_25
121.2
M2_26
119.5
M2_27
118.3
M2_28
118.0
M2_29
117.9
M2_30
117.6
M2_31
117.6
M2_32
117.4
M2_33
117.2
M2_34
116.8
M2_35
115.7
M2_36
115.6
M2_37
115.5
M2_38
113.6
M2_39
113.1
M2_40
113.0
M2_41
112.8
M2_42
111.7
M2_43
110.9
M2_44
110.6
M2_45
110.5
M2_46
109.9
M2_47
109.5
M2_48
109.4
M2_49
109.4
M2_50
109.0
M2_51
108.6
M2_52
108.6
M2_53
108.5
M2_54
108.4
M2_55
108.4
M2_56
108.3
M2_57
107.7
M2_58
107.7
M2_59
107.4
M2_60
105.8
M2_61
104.9
M2_62
104.9
M2_63
104.7
M2_64
104.6
M2_65
104.1
M2_66
103.4
M2_67
103.3
M2_68
101.7
M2_69
99.8
M2_70
98.8
M2_71
98.7
M2_72
96.9
M2_73
96.4
M2_74
96.2
M2_75
95.1
M2_76
94.7
M2_77
94.6
M2_78
93.6
M2_79
92.4
M2_80
91.0
M2_81
90.0
M2_82
89.2
M2_83
89.0
M2_84
88.5
M2_85
84.8
M2_86
84.4
M2_87
80.1
M2_88
79.2
M2_89
78.4
M2_90
54.0
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