MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.6 nTPM
HPA Brain:80.7 nTPM
GTEx:16.6 nTPM
FANTOM5:36.3 Scaled Tags Per Million
Pig:52.6 nTPM
Mouse:40.7 nTPM
Allen mouse:2.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 80.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.1
2219 Male, age 76, both hemispheres 81.4
2019 Male, age 18, unknown 75.2
1833 Male, age 53, unknown 73.5
1827 Male, age 72, unknown 72.5
1830 Male, age 51, unknown 72.0
2666 Male, age 74, left hemisphere 66.1
2586 Male, age 75, left hemisphere 61.0
1870 Female, age 42, unknown 60.7
2828 Female, age 72, unknown 60.2
2411 Female, age 72, unknown 58.1
Dorsal raphe nucleus
nTPM: 61.6
2750 Male, age 76, both hemispheres 69.1
2016 Female, age 72, unknown 65.2
1828 Male, age 53, unknown 62.1
2047 Male, age 72, unknown 58.4
2298 Female, age 72, unknown 53.2
Inferior colliculus
nTPM: 68.3
2849 Male, age 72, unknown 80.7
1848 Female, age 42, unknown 66.6
2097 Female, age 72, unknown 65.3
1890 Male, age 53, unknown 60.5
Median raphe nucleus
nTPM: 68.7
2220 Male, age 76, midline 68.7
Periaquaductal grey, anterior
nTPM: 68.3
1795 Male, age 51, unknown 69.3
1947 Male, age 18, unknown 69.3
2502 Female, age 75, unknown 66.2
Periaquaductal grey, dorsal
nTPM: 70.1
2850 Male, age 76, both hemispheres 78.2
1831 Male, age 72, unknown 75.7
2464 Female, age 72, unknown 64.0
1840 Male, age 53, unknown 62.5
Periaquaductal grey, lateral
nTPM: 69.2
2140 Male, age 76, both hemispheres 74.1
2053 Male, age 18, unknown 70.2
2272 Male, age 74, both hemispheres 63.3
Pretectal area
nTPM: 80.7
1816 Male, age 51, unknown 102.7
1944 Female, age 72, unknown 101.0
2007 Male, age 72, unknown 90.2
1815 Male, age 53, unknown 88.2
1817 Female, age 42, unknown 87.3
2273 Male, age 74, both hemispheres 76.8
2667 Female, age 75, unknown 75.7
2407 Male, age 75, both hemispheres 70.3
2224 Female, age 72, unknown 67.2
2825 Male, age 18, unknown 65.1
2316 Male, age 76, right hemisphere 62.9
Red nucleus
nTPM: 62.3
2725 Female, age 75, unknown 74.3
2584 Male, age 75, left hemisphere 69.7
2503 Female, age 72, unknown 68.6
2785 Male, age 18, unknown 67.1
2823 Male, age 76, right hemisphere 63.6
1821 Female, age 72, unknown 62.6
2588 Male, age 74, left hemisphere 60.5
1954 Female, age 42, unknown 59.9
1904 Male, age 53, unknown 59.5
1865 Male, age 51, unknown 55.8
2227 Male, age 72, unknown 55.5
2769 Male, age 72, unknown 50.5
Substantia nigra
nTPM: 68.3
2665 Male, age 74, both hemispheres 81.8
1941 Male, age 53, unknown 80.3
1889 Female, age 72, unknown 74.4
2409 Female, age 72, unknown 69.6
1916 Female, age 42, unknown 68.8
2583 Male, age 75, right hemisphere 67.3
2241 Male, age 72, unknown 66.3
2699 Male, age 18, unknown 58.9
2590 Female, age 75, unknown 58.8
1851 Male, age 51, unknown 56.3
Superior colliculus
nTPM: 70.2
2087 Female, age 72, unknown 84.5
2261 Male, age 18, unknown 79.2
1895 Male, age 76, right hemisphere 74.4
2668 Female, age 75, unknown 72.8
1839 Male, age 51, unknown 71.7
2664 Male, age 75, both hemispheres 66.1
1995 Male, age 72, unknown 65.3
1913 Female, age 42, unknown 64.5
2587 Male, age 74, left hemisphere 62.9
1796 Male, age 53, unknown 61.1
Ventral tegmental area
nTPM: 62.9
2218 Male, age 76, both hemispheres 76.9
2021 Male, age 53, unknown 64.7
2223 Female, age 72, unknown 63.5
1942 Male, age 51, unknown 58.4
1915 Female, age 42, unknown 57.9
2410 Female, age 72, unknown 56.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.6
Samples: 183

Max nTPM: 39.4
Min nTPM: 5.6
Std nTPM: 5.0
Median nTPM: 15.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 39.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 35.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 32.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 30.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 30.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 26.5
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 26.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 25.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 25.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 25.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 24.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 36.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.3
FF:10158-103A5 76 years, female 36.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 52.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 43.9
Samples: 4

Max nTPM: 47.6
Min nTPM: 41.7
Sample A Female 41.7
Sample B Female 42.9
Sample C Male 43.4
Sample D Male 47.6
Midbrain
nTPM: 46.9
Samples: 4

Max nTPM: 52.9
Min nTPM: 40.1
Sample A Female 40.1
Sample B Female 52.9
Sample C Male 45.9
Sample D Male 48.7
Periaqueductal gray
nTPM: 52.5
Samples: 3

Max nTPM: 58.8
Min nTPM: 47.8
Sample B Female 51.0
Sample C Male 47.8
Sample D Male 58.8
Superior colliculi
nTPM: 43.4
Samples: 4

Max nTPM: 49.0
Min nTPM: 37.7
Sample A Female 41.0
Sample B Female 37.7
Sample C Male 46.0
Sample D Male 49.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 40.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.7
Samples: 4

Max nTPM: 41.7
Min nTPM: 39.3
Sample A Male 39.3
Sample B Male 40.4
Sample C Female 41.3
Sample D Female 41.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
67764945 Antisense, RP_040916_02_G03, Mouse strain C57BL/6J (56 days, male) 3.7
74818623 Antisense, RP_060315_02_B02, Mouse strain C57BL/6J (56 days, male) 1.8

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