MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.0 nTPM
HPA Brain:43.4 nTPM
GTEx:16.0 nTPM
FANTOM5:114.9 Scaled Tags Per Million
Pig:21.1 nTPM
Mouse:36.4 nTPM
Allen mouse:1.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 43.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.9
1827 Male, age 72, unknown 45.2
1870 Female, age 42, unknown 37.4
2411 Female, age 72, unknown 36.2
1833 Male, age 53, unknown 35.6
1830 Male, age 51, unknown 29.8
2828 Female, age 72, unknown 29.3
2666 Male, age 74, left hemisphere 25.0
2586 Male, age 75, left hemisphere 23.8
2019 Male, age 18, unknown 18.5
2219 Male, age 76, both hemispheres 18.0
Dorsal raphe nucleus
nTPM: 19.0
2750 Male, age 76, both hemispheres 34.6
1828 Male, age 53, unknown 18.4
2298 Female, age 72, unknown 17.6
2016 Female, age 72, unknown 14.9
2047 Male, age 72, unknown 9.8
Inferior colliculus
nTPM: 24.7
2097 Female, age 72, unknown 31.2
1848 Female, age 42, unknown 24.4
2849 Male, age 72, unknown 22.1
1890 Male, age 53, unknown 21.1
Median raphe nucleus
nTPM: 16.3
2220 Male, age 76, midline 16.3
Periaquaductal grey, anterior
nTPM: 31.8
1947 Male, age 18, unknown 35.3
1795 Male, age 51, unknown 30.7
2502 Female, age 75, unknown 29.3
Periaquaductal grey, dorsal
nTPM: 23.6
1831 Male, age 72, unknown 40.3
2464 Female, age 72, unknown 26.6
1840 Male, age 53, unknown 16.0
2850 Male, age 76, both hemispheres 11.7
Periaquaductal grey, lateral
nTPM: 28.0
2053 Male, age 18, unknown 40.6
2272 Male, age 74, both hemispheres 30.8
2140 Male, age 76, both hemispheres 12.8
Pretectal area
nTPM: 37.5
1944 Female, age 72, unknown 71.4
1816 Male, age 51, unknown 69.9
1815 Male, age 53, unknown 38.7
2667 Female, age 75, unknown 35.0
2007 Male, age 72, unknown 31.5
2825 Male, age 18, unknown 31.3
2407 Male, age 75, both hemispheres 30.9
2273 Male, age 74, both hemispheres 30.0
1817 Female, age 42, unknown 25.9
2316 Male, age 76, right hemisphere 25.1
2224 Female, age 72, unknown 23.2
Red nucleus
nTPM: 30.6
1904 Male, age 53, unknown 41.1
2584 Male, age 75, left hemisphere 35.1
2503 Female, age 72, unknown 33.6
1865 Male, age 51, unknown 33.2
2823 Male, age 76, right hemisphere 32.0
2588 Male, age 74, left hemisphere 31.5
1821 Female, age 72, unknown 30.4
1954 Female, age 42, unknown 30.3
2227 Male, age 72, unknown 27.4
2725 Female, age 75, unknown 25.9
2769 Male, age 72, unknown 25.9
2785 Male, age 18, unknown 20.9
Substantia nigra
nTPM: 21.2
2583 Male, age 75, right hemisphere 39.4
1889 Female, age 72, unknown 32.3
2590 Female, age 75, unknown 30.2
2409 Female, age 72, unknown 26.1
2241 Male, age 72, unknown 16.5
1851 Male, age 51, unknown 15.9
2665 Male, age 74, both hemispheres 14.8
1941 Male, age 53, unknown 12.9
2699 Male, age 18, unknown 12.5
1916 Female, age 42, unknown 10.9
Superior colliculus
nTPM: 43.4
2261 Male, age 18, unknown 84.0
2087 Female, age 72, unknown 58.1
1913 Female, age 42, unknown 56.3
1796 Male, age 53, unknown 46.0
1995 Male, age 72, unknown 43.3
1895 Male, age 76, right hemisphere 35.0
2587 Male, age 74, left hemisphere 34.1
2668 Female, age 75, unknown 32.5
2664 Male, age 75, both hemispheres 22.7
1839 Male, age 51, unknown 22.4
Ventral tegmental area
nTPM: 26.6
2223 Female, age 72, unknown 40.8
2410 Female, age 72, unknown 26.1
2021 Male, age 53, unknown 25.9
1942 Male, age 51, unknown 25.1
2218 Male, age 76, both hemispheres 22.8
1915 Female, age 42, unknown 19.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.0
Samples: 183

Max nTPM: 59.2
Min nTPM: 3.2
Std nTPM: 10.8
Median nTPM: 12.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 59.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 56.9
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 51.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 49.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 47.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 45.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 44.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 43.1
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 42.1
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 41.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 39.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 114.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 114.9
FF:10158-103A5 76 years, female 114.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 21.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.9
Samples: 4

Max nTPM: 9.5
Min nTPM: 1.5
Sample A Female 6.6
Sample B Female 5.8
Sample C Male 9.5
Sample D Male 1.5
Midbrain
nTPM: 21.1
Samples: 4

Max nTPM: 69.4
Min nTPM: 1.1
Sample A Female 1.1
Sample B Female 5.7
Sample C Male 69.4
Sample D Male 8.2
Periaqueductal gray
nTPM: 7.8
Samples: 3

Max nTPM: 9.8
Min nTPM: 5.5
Sample B Female 5.5
Sample C Male 9.8
Sample D Male 8.0
Superior colliculi
nTPM: 8.5
Samples: 4

Max nTPM: 16.1
Min nTPM: 3.0
Sample A Female 6.6
Sample B Female 3.0
Sample C Male 8.3
Sample D Male 16.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 36.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.4
Samples: 4

Max nTPM: 40.5
Min nTPM: 32.7
Sample A Male 32.7
Sample B Male 37.2
Sample C Female 40.5
Sample D Female 35.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
72472791 Antisense, RP_051101_02_E09, Mouse strain C57BL/6J (56 days, male) 2.0
69671899 Antisense, RP_050428_02_E12, Mouse strain C57BL/6J (56 days, male) 1.8

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