MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:85.8 nTPM
HPA Brain:200.1 nTPM
GTEx:85.8 nTPM
FANTOM5:95.6 Scaled Tags Per Million
Pig:79.2 nTPM
Mouse:68.1 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 200.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 140.8
2586 Male, age 75, left hemisphere 259.2
2828 Female, age 72, unknown 205.8
1833 Male, age 53, unknown 147.3
1827 Male, age 72, unknown 145.7
2666 Male, age 74, left hemisphere 136.2
1830 Male, age 51, unknown 132.9
1870 Female, age 42, unknown 122.9
2411 Female, age 72, unknown 117.1
2019 Male, age 18, unknown 87.0
2219 Male, age 76, both hemispheres 54.3
Dorsal raphe nucleus
nTPM: 144.5
1828 Male, age 53, unknown 187.6
2016 Female, age 72, unknown 182.8
2047 Male, age 72, unknown 150.1
2298 Female, age 72, unknown 113.7
2750 Male, age 76, both hemispheres 88.4
Inferior colliculus
nTPM: 200.1
1848 Female, age 42, unknown 239.3
2849 Male, age 72, unknown 208.9
2097 Female, age 72, unknown 186.8
1890 Male, age 53, unknown 165.5
Median raphe nucleus
nTPM: 108.2
2220 Male, age 76, midline 108.2
Periaquaductal grey, anterior
nTPM: 152.3
2502 Female, age 75, unknown 171.7
1947 Male, age 18, unknown 163.3
1795 Male, age 51, unknown 121.8
Periaquaductal grey, dorsal
nTPM: 165.7
2850 Male, age 76, both hemispheres 190.7
2464 Female, age 72, unknown 185.6
1840 Male, age 53, unknown 172.5
1831 Male, age 72, unknown 113.8
Periaquaductal grey, lateral
nTPM: 155.9
2140 Male, age 76, both hemispheres 210.7
2053 Male, age 18, unknown 169.4
2272 Male, age 74, both hemispheres 87.4
Pretectal area
nTPM: 136.8
1817 Female, age 42, unknown 176.0
2825 Male, age 18, unknown 171.0
2316 Male, age 76, right hemisphere 155.3
2407 Male, age 75, both hemispheres 144.3
1944 Female, age 72, unknown 141.0
2667 Female, age 75, unknown 140.9
1816 Male, age 51, unknown 137.2
1815 Male, age 53, unknown 123.5
2273 Male, age 74, both hemispheres 110.5
2224 Female, age 72, unknown 109.7
2007 Male, age 72, unknown 95.4
Red nucleus
nTPM: 170.7
1954 Female, age 42, unknown 272.3
1821 Female, age 72, unknown 225.7
2503 Female, age 72, unknown 196.3
2227 Male, age 72, unknown 193.9
2769 Male, age 72, unknown 187.3
1904 Male, age 53, unknown 179.8
2588 Male, age 74, left hemisphere 169.6
1865 Male, age 51, unknown 163.5
2725 Female, age 75, unknown 139.2
2823 Male, age 76, right hemisphere 120.9
2584 Male, age 75, left hemisphere 111.4
2785 Male, age 18, unknown 88.2
Substantia nigra
nTPM: 147.6
2699 Male, age 18, unknown 226.7
1916 Female, age 42, unknown 196.5
2241 Male, age 72, unknown 160.7
1889 Female, age 72, unknown 153.4
2409 Female, age 72, unknown 144.1
1851 Male, age 51, unknown 144.0
2583 Male, age 75, right hemisphere 134.5
2590 Female, age 75, unknown 126.6
2665 Male, age 74, both hemispheres 100.6
1941 Male, age 53, unknown 88.4
Superior colliculus
nTPM: 144.5
2664 Male, age 75, both hemispheres 241.8
1839 Male, age 51, unknown 167.6
2668 Female, age 75, unknown 153.7
2261 Male, age 18, unknown 151.4
1796 Male, age 53, unknown 150.7
2087 Female, age 72, unknown 146.0
1995 Male, age 72, unknown 143.1
2587 Male, age 74, left hemisphere 114.1
1913 Female, age 42, unknown 90.8
1895 Male, age 76, right hemisphere 85.8
Ventral tegmental area
nTPM: 115.4
2410 Female, age 72, unknown 154.1
1915 Female, age 42, unknown 126.0
2021 Male, age 53, unknown 122.4
1942 Male, age 51, unknown 109.9
2218 Male, age 76, both hemispheres 106.4
2223 Female, age 72, unknown 73.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 85.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.8
Samples: 183

Max nTPM: 517.2
Min nTPM: 4.9
Std nTPM: 79.5
Median nTPM: 59.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 517.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 465.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 380.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 351.4
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 281.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 277.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 268.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 242.2
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 239.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 234.9
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 231.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 95.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.6
FF:10158-103A5 76 years, female 95.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 79.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 77.6
Samples: 4

Max nTPM: 97.5
Min nTPM: 64.4
Sample A Female 66.7
Sample B Female 81.6
Sample C Male 64.4
Sample D Male 97.5
Midbrain
nTPM: 64.2
Samples: 4

Max nTPM: 73.0
Min nTPM: 59.2
Sample A Female 61.2
Sample B Female 73.0
Sample C Male 63.4
Sample D Male 59.2
Periaqueductal gray
nTPM: 66.6
Samples: 3

Max nTPM: 79.4
Min nTPM: 59.0
Sample B Female 79.4
Sample C Male 59.0
Sample D Male 61.3
Superior colliculi
nTPM: 79.2
Samples: 4

Max nTPM: 91.2
Min nTPM: 67.2
Sample A Female 91.2
Sample B Female 86.5
Sample C Male 67.2
Sample D Male 71.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 68.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 68.1
Samples: 4

Max nTPM: 73.5
Min nTPM: 59.0
Sample A Male 68.0
Sample B Male 59.0
Sample C Female 73.5
Sample D Female 72.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
633291 Antisense, RP_040907_02_E08, Mouse strain C57BL/6J (56 days, male) 0.4

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