MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.8 nTPM
HPA Brain:90.1 nTPM
GTEx:23.8 nTPM
FANTOM5:30.9 Scaled Tags Per Million
Pig:30.6 nTPM
Mouse:11.7 nTPM
Allen mouse:1.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 90.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.1
2666 Male, age 74, left hemisphere 127.6
2586 Male, age 75, left hemisphere 102.2
1833 Male, age 53, unknown 81.8
2828 Female, age 72, unknown 76.7
1830 Male, age 51, unknown 70.0
2411 Female, age 72, unknown 64.7
2019 Male, age 18, unknown 61.8
1827 Male, age 72, unknown 56.3
1870 Female, age 42, unknown 56.1
2219 Male, age 76, both hemispheres 54.2
Dorsal raphe nucleus
nTPM: 79.7
2047 Male, age 72, unknown 101.6
1828 Male, age 53, unknown 90.7
2298 Female, age 72, unknown 70.4
2750 Male, age 76, both hemispheres 69.2
2016 Female, age 72, unknown 66.7
Inferior colliculus
nTPM: 78.7
1848 Female, age 42, unknown 93.2
1890 Male, age 53, unknown 82.9
2849 Male, age 72, unknown 82.4
2097 Female, age 72, unknown 56.4
Median raphe nucleus
nTPM: 86.6
2220 Male, age 76, midline 86.6
Periaquaductal grey, anterior
nTPM: 90.1
1947 Male, age 18, unknown 113.5
2502 Female, age 75, unknown 78.5
1795 Male, age 51, unknown 78.2
Periaquaductal grey, dorsal
nTPM: 64.3
2850 Male, age 76, both hemispheres 73.5
1840 Male, age 53, unknown 63.0
2464 Female, age 72, unknown 62.2
1831 Male, age 72, unknown 58.6
Periaquaductal grey, lateral
nTPM: 62.2
2272 Male, age 74, both hemispheres 68.1
2140 Male, age 76, both hemispheres 65.9
2053 Male, age 18, unknown 52.5
Pretectal area
nTPM: 69.8
1816 Male, age 51, unknown 109.6
1817 Female, age 42, unknown 81.3
2007 Male, age 72, unknown 77.8
1815 Male, age 53, unknown 74.0
1944 Female, age 72, unknown 73.0
2825 Male, age 18, unknown 69.2
2316 Male, age 76, right hemisphere 61.9
2224 Female, age 72, unknown 58.7
2273 Male, age 74, both hemispheres 57.8
2407 Male, age 75, both hemispheres 53.3
2667 Female, age 75, unknown 51.3
Red nucleus
nTPM: 81.0
2769 Male, age 72, unknown 91.9
2584 Male, age 75, left hemisphere 89.9
2227 Male, age 72, unknown 88.7
2588 Male, age 74, left hemisphere 88.2
2725 Female, age 75, unknown 86.1
1954 Female, age 42, unknown 82.4
2503 Female, age 72, unknown 79.9
1904 Male, age 53, unknown 78.5
2823 Male, age 76, right hemisphere 76.0
1821 Female, age 72, unknown 72.4
2785 Male, age 18, unknown 69.3
1865 Male, age 51, unknown 68.6
Substantia nigra
nTPM: 66.6
2665 Male, age 74, both hemispheres 83.2
2590 Female, age 75, unknown 77.4
1916 Female, age 42, unknown 75.2
1889 Female, age 72, unknown 74.3
2583 Male, age 75, right hemisphere 73.1
2699 Male, age 18, unknown 67.8
1851 Male, age 51, unknown 63.3
2241 Male, age 72, unknown 55.9
2409 Female, age 72, unknown 52.3
1941 Male, age 53, unknown 43.5
Superior colliculus
nTPM: 71.3
2087 Female, age 72, unknown 92.4
2668 Female, age 75, unknown 83.7
2261 Male, age 18, unknown 83.6
1796 Male, age 53, unknown 70.4
1895 Male, age 76, right hemisphere 69.8
2587 Male, age 74, left hemisphere 68.4
1839 Male, age 51, unknown 67.1
2664 Male, age 75, both hemispheres 65.5
1995 Male, age 72, unknown 58.8
1913 Female, age 42, unknown 53.3
Ventral tegmental area
nTPM: 65.0
2410 Female, age 72, unknown 73.1
2021 Male, age 53, unknown 67.3
1915 Female, age 42, unknown 65.1
2218 Male, age 76, both hemispheres 63.6
2223 Female, age 72, unknown 60.8
1942 Male, age 51, unknown 60.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.8
Samples: 183

Max nTPM: 65.8
Min nTPM: 8.2
Std nTPM: 7.7
Median nTPM: 23.3
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 65.8
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 63.5
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 45.4
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 41.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 40.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 39.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 38.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 35.6
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 34.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 34.5
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 34.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.9
FF:10158-103A5 76 years, female 30.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.8
Samples: 4

Max nTPM: 35.7
Min nTPM: 19.9
Sample A Female 35.7
Sample B Female 29.0
Sample C Male 30.4
Sample D Male 19.9
Midbrain
nTPM: 24.1
Samples: 4

Max nTPM: 27.8
Min nTPM: 19.7
Sample A Female 19.7
Sample B Female 21.1
Sample C Male 27.8
Sample D Male 27.6
Periaqueductal gray
nTPM: 19.5
Samples: 3

Max nTPM: 26.3
Min nTPM: 13.9
Sample B Female 18.3
Sample C Male 26.3
Sample D Male 13.9
Superior colliculi
nTPM: 30.6
Samples: 4

Max nTPM: 37.0
Min nTPM: 27.4
Sample A Female 37.0
Sample B Female 28.4
Sample C Male 29.7
Sample D Male 27.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 11.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.7
Samples: 4

Max nTPM: 12.6
Min nTPM: 10.9
Sample A Male 10.9
Sample B Male 12.1
Sample C Female 11.3
Sample D Female 12.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
74635331 Antisense, RP_060215_03_F10, Mouse strain C57BL/6J (56 days, male) 1.9

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