A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
71.6
nTPM
Monaco:
101.6
nTPM
Schmiedel:
110.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.6
HPA sample
nTPM
Memory B-cell nTPM: 64.2
Samples: 6
Max nTPM: 79.0
Min nTPM: 51.2
P10809_1017
51.2
P10809_1025
71.2
P10809_1044
69.7
P10809_1063
54.2
P10809_1092
79.0
P10809_1105
59.7
Naive B-cell nTPM: 71.6
Samples: 6
Max nTPM: 172.3
Min nTPM: 43.1
P10809_1011
43.1
P10809_1029
50.9
P10809_1048
172.3
P10809_1067
45.0
P10809_1091
69.1
P10809_1104
49.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
101.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 96.8
Samples: 4
Max nTPM: 123.3
Min nTPM: 74.1
RHH5310_R3677
95.6
RHH5218_R3590
74.1
RHH5247_R3619
123.3
RHH5276_R3648
94.1
Naive B-cell nTPM: 73.1
Samples: 4
Max nTPM: 91.7
Min nTPM: 45.0
RHH5308_R3675
70.9
RHH5216_R3588
91.7
RHH5245_R3617
45.0
RHH5274_R3646
84.9
Non-switched memory B-cell nTPM: 79.9
Samples: 4
Max nTPM: 96.7
Min nTPM: 60.3
RHH5309_R3676
96.7
RHH5217_R3589
71.4
RHH5246_R3618
60.3
RHH5275_R3647
91.3
Plasmablast nTPM: 78.1
Samples: 4
Max nTPM: 84.4
Min nTPM: 64.3
RHH5312_R3679
83.7
RHH5220_R3592
84.4
RHH5249_R3621
80.1
RHH5278_R3650
64.3
Switched memory B-cell nTPM: 101.6
Samples: 4
Max nTPM: 105.7
Min nTPM: 97.5
RHH5311_R3678
98.8
RHH5219_R3591
105.7
RHH5248_R3620
104.4
RHH5277_R3649
97.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
110.2
Schmiedel sample id
TPM
Naive B-cell TPM: 110.2
Samples: 91
Max TPM: 139.8
Min TPM: 69.7
B_CELL_NAIVE_1
139.8
B_CELL_NAIVE_2
137.8
B_CELL_NAIVE_3
132.8
B_CELL_NAIVE_4
129.1
B_CELL_NAIVE_5
128.4
B_CELL_NAIVE_6
128.3
B_CELL_NAIVE_7
127.9
B_CELL_NAIVE_8
127.3
B_CELL_NAIVE_9
124.8
B_CELL_NAIVE_10
124.7
B_CELL_NAIVE_11
124.3
B_CELL_NAIVE_12
124.2
B_CELL_NAIVE_13
123.0
B_CELL_NAIVE_14
122.7
B_CELL_NAIVE_15
122.6
B_CELL_NAIVE_16
121.8
B_CELL_NAIVE_17
121.6
B_CELL_NAIVE_18
121.4
B_CELL_NAIVE_19
120.0
B_CELL_NAIVE_20
119.8
B_CELL_NAIVE_21
119.3
B_CELL_NAIVE_22
118.6
B_CELL_NAIVE_23
118.1
B_CELL_NAIVE_24
117.7
B_CELL_NAIVE_25
117.5
B_CELL_NAIVE_26
117.3
B_CELL_NAIVE_27
117.1
B_CELL_NAIVE_28
117.0
B_CELL_NAIVE_29
116.9
B_CELL_NAIVE_30
113.9
B_CELL_NAIVE_31
113.8
B_CELL_NAIVE_32
113.2
B_CELL_NAIVE_33
113.1
B_CELL_NAIVE_34
112.8
B_CELL_NAIVE_35
112.5
B_CELL_NAIVE_36
112.2
B_CELL_NAIVE_37
111.7
B_CELL_NAIVE_38
111.3
B_CELL_NAIVE_39
111.3
B_CELL_NAIVE_40
111.1
B_CELL_NAIVE_41
110.6
B_CELL_NAIVE_42
110.6
B_CELL_NAIVE_43
110.6
B_CELL_NAIVE_44
110.5
B_CELL_NAIVE_45
110.3
B_CELL_NAIVE_46
109.8
B_CELL_NAIVE_47
109.7
B_CELL_NAIVE_48
109.2
B_CELL_NAIVE_49
108.7
B_CELL_NAIVE_50
108.6
B_CELL_NAIVE_51
108.3
B_CELL_NAIVE_52
108.2
B_CELL_NAIVE_53
107.7
B_CELL_NAIVE_54
107.6
B_CELL_NAIVE_55
107.4
B_CELL_NAIVE_56
107.4
B_CELL_NAIVE_57
106.8
B_CELL_NAIVE_58
106.4
B_CELL_NAIVE_59
106.3
B_CELL_NAIVE_60
105.6
B_CELL_NAIVE_61
105.4
B_CELL_NAIVE_62
105.1
B_CELL_NAIVE_63
104.4
B_CELL_NAIVE_64
104.2
B_CELL_NAIVE_65
103.8
B_CELL_NAIVE_66
103.7
B_CELL_NAIVE_67
103.5
B_CELL_NAIVE_68
103.2
B_CELL_NAIVE_69
102.2
B_CELL_NAIVE_70
102.2
B_CELL_NAIVE_71
102.0
B_CELL_NAIVE_72
102.0
B_CELL_NAIVE_73
101.4
B_CELL_NAIVE_74
100.6
B_CELL_NAIVE_75
100.6
B_CELL_NAIVE_76
100.1
B_CELL_NAIVE_77
100.1
B_CELL_NAIVE_78
99.1
B_CELL_NAIVE_79
99.0
B_CELL_NAIVE_80
98.7
B_CELL_NAIVE_81
98.0
B_CELL_NAIVE_82
97.8
B_CELL_NAIVE_83
97.3
B_CELL_NAIVE_84
95.8
B_CELL_NAIVE_85
95.3
B_CELL_NAIVE_86
93.2
B_CELL_NAIVE_87
91.4
B_CELL_NAIVE_88
90.6
B_CELL_NAIVE_89
85.1
B_CELL_NAIVE_90
80.1
B_CELL_NAIVE_91
69.7
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The Human Protein Atlas project is funded
