A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
113.3
nTPM
Monaco:
169.0
nTPM
Schmiedel:
142.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
113.3
HPA sample
nTPM
Classical monocyte nTPM: 98.1
Samples: 6
Max nTPM: 122.2
Min nTPM: 70.5
P10809_1003
99.6
P10809_1020
93.7
P10809_1039
122.2
P10809_1058
70.5
P10809_1080
110.8
P10809_1107
91.7
Intermediate monocyte nTPM: 92.7
Samples: 6
Max nTPM: 111.2
Min nTPM: 54.1
P10809_1004
100.9
P10809_1023
107.1
P10809_1042
111.2
P10809_1061
54.1
P10809_1081
84.6
P10809_1108
98.5
Non-classical monocyte nTPM: 113.3
Samples: 5
Max nTPM: 234.0
Min nTPM: 60.7
P10809_1005
99.1
P10809_1053
100.2
P10809_1072
234.0
P10809_1082
60.7
P10809_1109
72.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
169.0
Monaco sample
nTPM
Classical monocyte nTPM: 144.0
Samples: 4
Max nTPM: 162.9
Min nTPM: 117.5
RHH5313_R3680
133.2
RHH5221_R3593
162.9
RHH5250_R3622
117.5
RHH5279_R3651
162.3
Intermediate monocyte nTPM: 147.1
Samples: 4
Max nTPM: 178.1
Min nTPM: 126.1
RHH5314_R3681
126.1
RHH5222_R3594
178.1
RHH5251_R3623
137.1
RHH5280_R3652
147.0
Non-classical monocyte nTPM: 169.0
Samples: 4
Max nTPM: 208.5
Min nTPM: 137.9
RHH5315_R3682
137.9
RHH5223_R3595
208.5
RHH5252_R3624
158.3
RHH5281_R3653
171.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
142.7
Schmiedel sample id
TPM
Classical monocyte TPM: 102.8
Samples: 91
Max TPM: 128.8
Min TPM: 81.3
MONOCYTES_1
128.8
MONOCYTES_2
126.0
MONOCYTES_3
122.1
MONOCYTES_4
120.6
MONOCYTES_5
120.0
MONOCYTES_6
119.3
MONOCYTES_7
117.9
MONOCYTES_8
117.0
MONOCYTES_9
116.7
MONOCYTES_10
115.0
MONOCYTES_11
113.8
MONOCYTES_12
112.3
MONOCYTES_13
112.3
MONOCYTES_14
111.4
MONOCYTES_15
111.4
MONOCYTES_16
109.7
MONOCYTES_17
109.4
MONOCYTES_18
109.2
MONOCYTES_19
109.0
MONOCYTES_20
109.0
MONOCYTES_21
108.6
MONOCYTES_22
108.4
MONOCYTES_23
108.3
MONOCYTES_24
107.9
MONOCYTES_25
107.8
MONOCYTES_26
107.8
MONOCYTES_27
107.7
MONOCYTES_28
107.6
MONOCYTES_29
107.6
MONOCYTES_30
106.8
MONOCYTES_31
106.7
MONOCYTES_32
106.4
MONOCYTES_33
106.0
MONOCYTES_34
105.3
MONOCYTES_35
105.1
MONOCYTES_36
105.0
MONOCYTES_37
104.8
MONOCYTES_38
104.7
MONOCYTES_39
104.3
MONOCYTES_40
104.1
MONOCYTES_41
104.1
MONOCYTES_42
103.0
MONOCYTES_43
102.7
MONOCYTES_44
102.6
MONOCYTES_45
102.4
MONOCYTES_46
102.4
MONOCYTES_47
102.4
MONOCYTES_48
102.3
MONOCYTES_49
102.1
MONOCYTES_50
102.1
MONOCYTES_51
101.8
MONOCYTES_52
101.4
MONOCYTES_53
100.6
MONOCYTES_54
100.4
MONOCYTES_55
100.2
MONOCYTES_56
99.9
MONOCYTES_57
99.8
MONOCYTES_58
99.4
MONOCYTES_59
99.1
MONOCYTES_60
98.6
MONOCYTES_61
98.3
MONOCYTES_62
98.2
MONOCYTES_63
97.6
MONOCYTES_64
97.2
MONOCYTES_65
96.7
MONOCYTES_66
96.7
MONOCYTES_67
96.7
MONOCYTES_68
96.5
MONOCYTES_69
96.4
MONOCYTES_70
96.2
MONOCYTES_71
95.6
MONOCYTES_72
95.5
MONOCYTES_73
95.1
MONOCYTES_74
95.0
MONOCYTES_75
94.5
MONOCYTES_76
94.2
MONOCYTES_77
93.9
MONOCYTES_78
93.9
MONOCYTES_79
93.5
MONOCYTES_80
92.5
MONOCYTES_81
92.3
MONOCYTES_82
92.2
MONOCYTES_83
91.9
MONOCYTES_84
91.3
MONOCYTES_85
91.0
MONOCYTES_86
90.2
MONOCYTES_87
88.8
MONOCYTES_88
88.0
MONOCYTES_89
84.1
MONOCYTES_90
83.9
MONOCYTES_91
81.3
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Non-classical monocyte TPM: 142.7
Samples: 90
Max TPM: 185.9
Min TPM: 104.6
M2_1
185.9
M2_2
181.6
M2_3
177.3
M2_4
168.9
M2_5
168.8
M2_6
167.6
M2_7
166.1
M2_8
165.0
M2_9
163.7
M2_10
163.3
M2_11
161.2
M2_12
160.7
M2_13
158.7
M2_14
158.5
M2_15
155.2
M2_16
155.0
M2_17
153.9
M2_18
153.5
M2_19
153.0
M2_20
152.5
M2_21
152.4
M2_22
152.3
M2_23
152.1
M2_24
151.7
M2_25
151.4
M2_26
151.4
M2_27
151.2
M2_28
149.6
M2_29
148.6
M2_30
148.4
M2_31
147.6
M2_32
147.6
M2_33
147.6
M2_34
147.5
M2_35
147.1
M2_36
146.9
M2_37
146.4
M2_38
146.0
M2_39
145.2
M2_40
145.0
M2_41
144.1
M2_42
143.6
M2_43
143.5
M2_44
143.3
M2_45
142.8
M2_46
141.9
M2_47
141.4
M2_48
140.3
M2_49
139.6
M2_50
139.5
M2_51
139.1
M2_52
139.0
M2_53
138.8
M2_54
138.6
M2_55
138.3
M2_56
137.2
M2_57
136.8
M2_58
134.8
M2_59
134.5
M2_60
133.9
M2_61
133.8
M2_62
133.7
M2_63
133.6
M2_64
133.5
M2_65
133.4
M2_66
133.4
M2_67
133.1
M2_68
132.4
M2_69
130.9
M2_70
130.9
M2_71
130.5
M2_72
130.3
M2_73
128.9
M2_74
128.3
M2_75
128.2
M2_76
128.2
M2_77
127.1
M2_78
126.3
M2_79
126.3
M2_80
126.0
M2_81
125.6
M2_82
125.3
M2_83
125.1
M2_84
123.0
M2_85
120.5
M2_86
120.1
M2_87
119.6
M2_88
117.0
M2_89
114.2
M2_90
104.6
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