MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.2 nTPM
HPA Brain:36.6 nTPM
GTEx:12.2 nTPM
FANTOM5:79.7 Scaled Tags Per Million
Pig:20.0 nTPM
Mouse:2.4 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 36.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.4
2828 Female, age 72, unknown 37.1
2586 Male, age 75, left hemisphere 33.8
1833 Male, age 53, unknown 30.8
2666 Male, age 74, left hemisphere 30.0
1830 Male, age 51, unknown 29.3
1827 Male, age 72, unknown 27.4
1870 Female, age 42, unknown 26.0
2411 Female, age 72, unknown 24.9
2019 Male, age 18, unknown 23.6
2219 Male, age 76, both hemispheres 21.6
Dorsal raphe nucleus
nTPM: 27.5
1828 Male, age 53, unknown 31.1
2016 Female, age 72, unknown 30.4
2047 Male, age 72, unknown 29.4
2750 Male, age 76, both hemispheres 25.9
2298 Female, age 72, unknown 20.5
Inferior colliculus
nTPM: 29.5
2849 Male, age 72, unknown 40.3
1848 Female, age 42, unknown 31.7
1890 Male, age 53, unknown 25.9
2097 Female, age 72, unknown 20.0
Median raphe nucleus
nTPM: 28.2
2220 Male, age 76, midline 28.2
Periaquaductal grey, anterior
nTPM: 30.1
2502 Female, age 75, unknown 31.8
1947 Male, age 18, unknown 30.6
1795 Male, age 51, unknown 27.9
Periaquaductal grey, dorsal
nTPM: 33.9
2850 Male, age 76, both hemispheres 41.5
2464 Female, age 72, unknown 35.7
1840 Male, age 53, unknown 31.3
1831 Male, age 72, unknown 27.3
Periaquaductal grey, lateral
nTPM: 36.6
2140 Male, age 76, both hemispheres 53.6
2053 Male, age 18, unknown 32.2
2272 Male, age 74, both hemispheres 24.0
Pretectal area
nTPM: 30.4
2667 Female, age 75, unknown 44.0
2316 Male, age 76, right hemisphere 41.1
2825 Male, age 18, unknown 32.3
2224 Female, age 72, unknown 31.1
2407 Male, age 75, both hemispheres 29.4
2273 Male, age 74, both hemispheres 28.3
1817 Female, age 42, unknown 27.0
1944 Female, age 72, unknown 26.5
1815 Male, age 53, unknown 26.1
1816 Male, age 51, unknown 25.7
2007 Male, age 72, unknown 23.0
Red nucleus
nTPM: 29.9
2588 Male, age 74, left hemisphere 39.2
1954 Female, age 42, unknown 35.4
2769 Male, age 72, unknown 34.2
2227 Male, age 72, unknown 32.5
2823 Male, age 76, right hemisphere 31.3
1865 Male, age 51, unknown 30.2
1904 Male, age 53, unknown 29.9
2503 Female, age 72, unknown 27.7
2725 Female, age 75, unknown 26.7
1821 Female, age 72, unknown 25.0
2785 Male, age 18, unknown 23.4
2584 Male, age 75, left hemisphere 22.9
Substantia nigra
nTPM: 29.9
2699 Male, age 18, unknown 46.6
2665 Male, age 74, both hemispheres 37.7
2409 Female, age 72, unknown 31.3
1851 Male, age 51, unknown 29.5
1916 Female, age 42, unknown 28.1
2583 Male, age 75, right hemisphere 28.0
2590 Female, age 75, unknown 26.2
2241 Male, age 72, unknown 25.6
1889 Female, age 72, unknown 24.4
1941 Male, age 53, unknown 21.5
Superior colliculus
nTPM: 28.8
2664 Male, age 75, both hemispheres 45.4
1839 Male, age 51, unknown 32.5
1796 Male, age 53, unknown 31.5
2087 Female, age 72, unknown 30.6
1995 Male, age 72, unknown 26.9
2261 Male, age 18, unknown 25.9
1913 Female, age 42, unknown 25.1
1895 Male, age 76, right hemisphere 24.1
2587 Male, age 74, left hemisphere 23.6
2668 Female, age 75, unknown 22.2
Ventral tegmental area
nTPM: 27.1
2021 Male, age 53, unknown 34.7
2218 Male, age 76, both hemispheres 29.3
1942 Male, age 51, unknown 27.0
2223 Female, age 72, unknown 25.2
1915 Female, age 42, unknown 23.5
2410 Female, age 72, unknown 23.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.2
Samples: 183

Max nTPM: 46.9
Min nTPM: 2.0
Std nTPM: 8.6
Median nTPM: 9.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 46.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 44.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 40.3
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 40.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 40.2
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 37.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 35.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 32.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 29.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 29.4
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 29.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 79.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.7
FF:10158-103A5 76 years, female 79.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 20.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.0
Samples: 4

Max nTPM: 18.7
Min nTPM: 5.8
Sample A Female 5.8
Sample B Female 18.7
Sample C Male 16.0
Sample D Male 15.5
Midbrain
nTPM: 10.7
Samples: 4

Max nTPM: 14.2
Min nTPM: 6.1
Sample A Female 6.1
Sample B Female 14.2
Sample C Male 11.1
Sample D Male 11.4
Periaqueductal gray
nTPM: 20.0
Samples: 3

Max nTPM: 21.0
Min nTPM: 18.9
Sample B Female 18.9
Sample C Male 21.0
Sample D Male 20.2
Superior colliculi
nTPM: 9.3
Samples: 4

Max nTPM: 10.9
Min nTPM: 6.8
Sample A Female 6.8
Sample B Female 10.8
Sample C Male 8.5
Sample D Male 10.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.5
Samples: 4

Max nTPM: 3.1
Min nTPM: 1.4
Sample A Male 2.5
Sample B Male 1.4
Sample C Female 3.1
Sample D Female 2.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69289111 Antisense, RP_050407_02_D11, Mouse strain C57BL/6J (56 days, male) 0.3

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