A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
65.9
nTPM
Monaco:
63.6
nTPM
Schmiedel:
115.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
65.9
HPA sample
nTPM
NK-cell nTPM: 65.9
Samples: 6
Max nTPM: 109.4
Min nTPM: 0.4
P10809_1013
45.9
P10809_1033
109.4
P10809_1052
80.7
P10809_1071
55.4
P10809_1093
0.4
P10809_1103
103.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.6
Monaco sample
nTPM
NK-cell nTPM: 63.6
Samples: 4
Max nTPM: 78.9
Min nTPM: 44.5
RHH5316_R3683
73.6
RHH5224_R3596
78.9
RHH5253_R3625
44.5
RHH5282_R3654
57.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
115.5
Schmiedel sample id
TPM
NK-cell TPM: 115.5
Samples: 90
Max TPM: 179.0
Min TPM: 74.8
NK_1
179.0
NK_2
166.0
NK_3
150.0
NK_4
145.8
NK_5
143.8
NK_6
143.6
NK_7
142.7
NK_8
141.9
NK_9
141.7
NK_10
138.8
NK_11
138.7
NK_12
138.4
NK_13
138.2
NK_14
135.2
NK_15
134.3
NK_16
133.2
NK_17
131.7
NK_18
130.7
NK_19
130.4
NK_20
129.7
NK_21
128.2
NK_22
127.9
NK_23
127.6
NK_24
127.0
NK_25
126.3
NK_26
125.8
NK_27
125.4
NK_28
125.1
NK_29
124.4
NK_30
124.1
NK_31
124.1
NK_32
123.8
NK_33
123.2
NK_34
121.6
NK_35
121.5
NK_36
120.8
NK_37
120.8
NK_38
120.7
NK_39
120.5
NK_40
120.5
NK_41
120.1
NK_42
119.0
NK_43
118.5
NK_44
118.0
NK_45
117.6
NK_46
115.9
NK_47
114.5
NK_48
113.6
NK_49
113.4
NK_50
113.4
NK_51
113.3
NK_52
113.0
NK_53
111.7
NK_54
111.1
NK_55
110.8
NK_56
110.5
NK_57
110.2
NK_58
109.8
NK_59
109.7
NK_60
107.8
NK_61
107.6
NK_62
107.5
NK_63
106.5
NK_64
106.1
NK_65
106.0
NK_66
104.5
NK_67
103.8
NK_68
103.3
NK_69
103.2
NK_70
101.8
NK_71
99.8
NK_72
98.8
NK_73
95.7
NK_74
95.3
NK_75
94.7
NK_76
93.4
NK_77
92.3
NK_78
92.2
NK_79
91.6
NK_80
89.6
NK_81
89.3
NK_82
88.5
NK_83
87.7
NK_84
83.1
NK_85
82.5
NK_86
81.6
NK_87
79.5
NK_88
77.1
NK_89
74.9
NK_90
74.8
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