A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
73.0
nTPM
Monaco:
47.0
nTPM
Schmiedel:
45.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
73.0
HPA sample
nTPM
Classical monocyte nTPM: 59.6
Samples: 6
Max nTPM: 83.4
Min nTPM: 46.7
P10809_1003
47.1
P10809_1020
70.7
P10809_1039
83.4
P10809_1058
46.7
P10809_1080
53.3
P10809_1107
56.5
Intermediate monocyte nTPM: 60.3
Samples: 6
Max nTPM: 72.9
Min nTPM: 47.9
P10809_1004
52.0
P10809_1023
72.7
P10809_1042
72.9
P10809_1061
50.5
P10809_1081
47.9
P10809_1108
66.0
Non-classical monocyte nTPM: 73.0
Samples: 5
Max nTPM: 130.2
Min nTPM: 44.5
P10809_1005
44.6
P10809_1053
71.4
P10809_1072
130.2
P10809_1082
44.5
P10809_1109
74.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.0
Monaco sample
nTPM
Classical monocyte nTPM: 38.7
Samples: 4
Max nTPM: 51.0
Min nTPM: 20.5
RHH5313_R3680
47.8
RHH5221_R3593
20.5
RHH5250_R3622
35.4
RHH5279_R3651
51.0
Intermediate monocyte nTPM: 47.0
Samples: 4
Max nTPM: 84.4
Min nTPM: 20.3
RHH5314_R3681
60.7
RHH5222_R3594
22.7
RHH5251_R3623
20.3
RHH5280_R3652
84.4
Non-classical monocyte nTPM: 32.1
Samples: 4
Max nTPM: 42.9
Min nTPM: 15.8
RHH5315_R3682
41.1
RHH5223_R3595
15.8
RHH5252_R3624
28.5
RHH5281_R3653
42.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.0
Schmiedel sample id
TPM
Classical monocyte TPM: 33.7
Samples: 91
Max TPM: 46.1
Min TPM: 20.8
MONOCYTES_1
46.1
MONOCYTES_2
46.0
MONOCYTES_3
45.3
MONOCYTES_4
45.0
MONOCYTES_5
44.5
MONOCYTES_6
43.4
MONOCYTES_7
42.8
MONOCYTES_8
42.4
MONOCYTES_9
41.7
MONOCYTES_10
40.3
MONOCYTES_11
40.0
MONOCYTES_12
39.6
MONOCYTES_13
39.2
MONOCYTES_14
38.9
MONOCYTES_15
38.9
MONOCYTES_16
38.9
MONOCYTES_17
38.6
MONOCYTES_18
38.5
MONOCYTES_19
38.2
MONOCYTES_20
38.2
MONOCYTES_21
38.1
MONOCYTES_22
37.4
MONOCYTES_23
37.3
MONOCYTES_24
37.1
MONOCYTES_25
36.8
MONOCYTES_26
36.6
MONOCYTES_27
36.5
MONOCYTES_28
36.5
MONOCYTES_29
36.3
MONOCYTES_30
36.1
MONOCYTES_31
36.0
MONOCYTES_32
35.8
MONOCYTES_33
35.6
MONOCYTES_34
35.2
MONOCYTES_35
35.1
MONOCYTES_36
35.0
MONOCYTES_37
35.0
MONOCYTES_38
34.9
MONOCYTES_39
34.6
MONOCYTES_40
34.4
MONOCYTES_41
34.2
MONOCYTES_42
34.2
MONOCYTES_43
33.8
MONOCYTES_44
33.6
MONOCYTES_45
33.5
MONOCYTES_46
33.5
MONOCYTES_47
33.4
MONOCYTES_48
32.9
MONOCYTES_49
32.8
MONOCYTES_50
32.3
MONOCYTES_51
32.2
MONOCYTES_52
32.1
MONOCYTES_53
32.1
MONOCYTES_54
32.0
MONOCYTES_55
31.8
MONOCYTES_56
31.7
MONOCYTES_57
31.7
MONOCYTES_58
31.5
MONOCYTES_59
31.5
MONOCYTES_60
31.2
MONOCYTES_61
31.0
MONOCYTES_62
30.8
MONOCYTES_63
30.8
MONOCYTES_64
30.7
MONOCYTES_65
30.7
MONOCYTES_66
30.3
MONOCYTES_67
30.2
MONOCYTES_68
30.1
MONOCYTES_69
29.9
MONOCYTES_70
29.8
MONOCYTES_71
29.6
MONOCYTES_72
29.5
MONOCYTES_73
29.4
MONOCYTES_74
28.9
MONOCYTES_75
28.6
MONOCYTES_76
28.6
MONOCYTES_77
28.3
MONOCYTES_78
28.2
MONOCYTES_79
28.1
MONOCYTES_80
27.8
MONOCYTES_81
27.4
MONOCYTES_82
27.4
MONOCYTES_83
27.2
MONOCYTES_84
25.9
MONOCYTES_85
25.7
MONOCYTES_86
25.4
MONOCYTES_87
24.8
MONOCYTES_88
23.6
MONOCYTES_89
23.2
MONOCYTES_90
22.1
MONOCYTES_91
20.8
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Non-classical monocyte TPM: 45.0
Samples: 90
Max TPM: 69.7
Min TPM: 25.6
M2_1
69.7
M2_2
62.9
M2_3
59.3
M2_4
57.6
M2_5
57.2
M2_6
57.1
M2_7
56.6
M2_8
55.4
M2_9
53.5
M2_10
53.5
M2_11
53.3
M2_12
53.1
M2_13
52.9
M2_14
52.7
M2_15
52.2
M2_16
51.4
M2_17
51.2
M2_18
50.9
M2_19
50.7
M2_20
50.5
M2_21
50.4
M2_22
50.2
M2_23
50.1
M2_24
49.9
M2_25
49.9
M2_26
49.1
M2_27
49.0
M2_28
48.9
M2_29
48.8
M2_30
48.1
M2_31
48.0
M2_32
47.8
M2_33
47.5
M2_34
47.5
M2_35
47.4
M2_36
47.4
M2_37
47.4
M2_38
47.2
M2_39
47.1
M2_40
46.7
M2_41
46.6
M2_42
46.0
M2_43
46.0
M2_44
45.8
M2_45
45.4
M2_46
44.9
M2_47
44.7
M2_48
44.4
M2_49
44.4
M2_50
44.3
M2_51
44.3
M2_52
44.2
M2_53
44.0
M2_54
43.6
M2_55
43.4
M2_56
43.3
M2_57
42.8
M2_58
42.5
M2_59
42.4
M2_60
42.4
M2_61
42.0
M2_62
41.8
M2_63
41.1
M2_64
41.0
M2_65
40.7
M2_66
40.6
M2_67
40.5
M2_68
40.5
M2_69
39.6
M2_70
39.0
M2_71
38.6
M2_72
38.3
M2_73
38.3
M2_74
38.2
M2_75
37.8
M2_76
37.3
M2_77
36.3
M2_78
36.3
M2_79
36.0
M2_80
35.9
M2_81
35.7
M2_82
34.1
M2_83
33.4
M2_84
33.3
M2_85
32.0
M2_86
31.9
M2_87
31.0
M2_88
30.7
M2_89
28.4
M2_90
25.6
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The Human Protein Atlas project is funded
