MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.2 nTPM
HPA Brain:37.7 nTPM
GTEx:59.2 nTPM
FANTOM5:26.9 Scaled Tags Per Million
Pig:17.3 nTPM
Mouse:30.7 nTPM
Allen mouse:4.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 37.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.7
2586 Male, age 75, left hemisphere 40.5
1827 Male, age 72, unknown 36.4
2019 Male, age 18, unknown 35.5
2828 Female, age 72, unknown 33.6
2411 Female, age 72, unknown 32.4
1870 Female, age 42, unknown 31.9
2666 Male, age 74, left hemisphere 27.9
2219 Male, age 76, both hemispheres 26.6
1833 Male, age 53, unknown 26.0
1830 Male, age 51, unknown 25.9
Dorsal raphe nucleus
nTPM: 31.3
2298 Female, age 72, unknown 36.9
1828 Male, age 53, unknown 32.8
2047 Male, age 72, unknown 31.3
2750 Male, age 76, both hemispheres 28.5
2016 Female, age 72, unknown 26.9
Inferior colliculus
nTPM: 32.7
2097 Female, age 72, unknown 43.1
1890 Male, age 53, unknown 34.8
1848 Female, age 42, unknown 28.7
2849 Male, age 72, unknown 24.3
Median raphe nucleus
nTPM: 29.4
2220 Male, age 76, midline 29.4
Periaquaductal grey, anterior
nTPM: 34.3
1947 Male, age 18, unknown 35.7
2502 Female, age 75, unknown 34.7
1795 Male, age 51, unknown 32.6
Periaquaductal grey, dorsal
nTPM: 28.3
1840 Male, age 53, unknown 31.5
1831 Male, age 72, unknown 29.9
2464 Female, age 72, unknown 26.4
2850 Male, age 76, both hemispheres 25.2
Periaquaductal grey, lateral
nTPM: 29.6
2272 Male, age 74, both hemispheres 30.8
2053 Male, age 18, unknown 29.6
2140 Male, age 76, both hemispheres 28.6
Pretectal area
nTPM: 35.8
2007 Male, age 72, unknown 47.3
1816 Male, age 51, unknown 45.8
1817 Female, age 42, unknown 41.1
2667 Female, age 75, unknown 39.1
1815 Male, age 53, unknown 38.2
1944 Female, age 72, unknown 33.9
2224 Female, age 72, unknown 32.5
2273 Male, age 74, both hemispheres 31.0
2316 Male, age 76, right hemisphere 30.4
2825 Male, age 18, unknown 29.1
2407 Male, age 75, both hemispheres 25.5
Red nucleus
nTPM: 32.8
1821 Female, age 72, unknown 43.7
2785 Male, age 18, unknown 35.5
1904 Male, age 53, unknown 33.5
2588 Male, age 74, left hemisphere 33.4
2503 Female, age 72, unknown 33.3
1954 Female, age 42, unknown 32.6
1865 Male, age 51, unknown 31.7
2823 Male, age 76, right hemisphere 31.5
2725 Female, age 75, unknown 31.3
2227 Male, age 72, unknown 31.0
2769 Male, age 72, unknown 30.1
2584 Male, age 75, left hemisphere 25.8
Substantia nigra
nTPM: 37.7
1916 Female, age 42, unknown 48.3
1851 Male, age 51, unknown 43.8
1889 Female, age 72, unknown 38.9
2665 Male, age 74, both hemispheres 38.8
2241 Male, age 72, unknown 38.7
1941 Male, age 53, unknown 36.0
2583 Male, age 75, right hemisphere 35.4
2409 Female, age 72, unknown 34.2
2590 Female, age 75, unknown 31.8
2699 Male, age 18, unknown 30.7
Superior colliculus
nTPM: 32.7
2261 Male, age 18, unknown 37.2
2087 Female, age 72, unknown 36.3
2664 Male, age 75, both hemispheres 36.3
2668 Female, age 75, unknown 35.4
2587 Male, age 74, left hemisphere 33.6
1895 Male, age 76, right hemisphere 33.1
1796 Male, age 53, unknown 31.9
1995 Male, age 72, unknown 27.9
1913 Female, age 42, unknown 27.7
1839 Male, age 51, unknown 27.6
Ventral tegmental area
nTPM: 32.0
1915 Female, age 42, unknown 38.2
2410 Female, age 72, unknown 36.2
2218 Male, age 76, both hemispheres 31.9
1942 Male, age 51, unknown 31.8
2021 Male, age 53, unknown 28.3
2223 Female, age 72, unknown 25.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 59.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.2
Samples: 183

Max nTPM: 132.0
Min nTPM: 27.2
Std nTPM: 15.1
Median nTPM: 57.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 132.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 110.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 110.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 100.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 99.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 94.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 91.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 90.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 88.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 87.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 86.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 26.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.9
FF:10158-103A5 76 years, female 26.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.9
Samples: 4

Max nTPM: 22.0
Min nTPM: 13.7
Sample A Female 22.0
Sample B Female 15.3
Sample C Male 16.4
Sample D Male 13.7
Midbrain
nTPM: 16.8
Samples: 4

Max nTPM: 20.1
Min nTPM: 15.4
Sample A Female 20.1
Sample B Female 16.0
Sample C Male 15.5
Sample D Male 15.4
Periaqueductal gray
nTPM: 13.6
Samples: 3

Max nTPM: 16.0
Min nTPM: 11.1
Sample B Female 16.0
Sample C Male 13.8
Sample D Male 11.1
Superior colliculi
nTPM: 17.3
Samples: 4

Max nTPM: 20.1
Min nTPM: 14.2
Sample A Female 20.1
Sample B Female 14.2
Sample C Male 19.3
Sample D Male 15.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 30.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.7
Samples: 4

Max nTPM: 33.5
Min nTPM: 28.1
Sample A Male 33.5
Sample B Male 28.1
Sample C Female 28.3
Sample D Female 33.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
69105164 Antisense, RP_050316_02_B10, Mouse strain C57BL/6J (56 days, male) 4.0

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