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  • SUMMARY

  • TISSUE

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  • ALKBH7
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:68.3 nTPM
FANTOM5:47.9 Scaled Tags Per Million
Pig:5.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA039571Antibody HPA039872
Glial cells Not detectedNot detected
Neuronal cells LowMedium




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 68.3
Samples: 300

Max nTPM: 168.4
Min nTPM: 28.8
Std nTPM: 20.2
Median nTPM: 65.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 168.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 159.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 132.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 128.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 127.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 125.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 124.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 120.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 116.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 114.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 112.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 111.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 111.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 109.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 107.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 106.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 105.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 104.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 102.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 101.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 100.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 100.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 99.1
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 97.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 97.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 97.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 95.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 94.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 94.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 94.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 94.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 93.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 92.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 92.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 92.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 91.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 89.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 89.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 89.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 89.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 88.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 88.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 88.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 88.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 87.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 86.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 86.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 86.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 86.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 85.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 85.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 85.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 85.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 85.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 85.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 85.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 84.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 84.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 84.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 83.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 82.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 82.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 81.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 81.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 81.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 81.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 80.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 80.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 80.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 79.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 79.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 79.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 77.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 77.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 77.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 77.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 76.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 76.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 76.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 75.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 75.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 75.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 75.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 74.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 74.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 74.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 74.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 73.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 73.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 73.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 73.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 73.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 73.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 72.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 72.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 72.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 71.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 71.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 71.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 71.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 71.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 71.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 71.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 71.0
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 70.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 70.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 70.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 70.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 70.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 70.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 70.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 70.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 69.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 69.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 69.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 69.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 68.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 68.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 68.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 68.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 68.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 68.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 68.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 68.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 67.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 67.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 67.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 67.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 67.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 67.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 66.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 66.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 66.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 66.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 66.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 66.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 66.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 66.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 66.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 66.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 66.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 66.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 65.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 65.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 65.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 65.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 65.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 65.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 65.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 65.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 64.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 64.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 64.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 64.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 64.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 64.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 63.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 63.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 63.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 63.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 63.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 63.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 63.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 63.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 63.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 63.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 62.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 62.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 61.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 61.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 61.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 61.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 61.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 61.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 61.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 61.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 61.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 61.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 60.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 60.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 60.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 60.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 60.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 60.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 60.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 60.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 60.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 60.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 59.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 59.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 59.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 59.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 59.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 59.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 59.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 59.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 58.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 58.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 58.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 58.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 58.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 58.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 57.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 57.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 57.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 57.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 57.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 57.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 57.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 56.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 56.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 56.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 56.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 56.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 56.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 56.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 56.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 56.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 55.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 55.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 55.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 55.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 55.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 55.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 55.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 55.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 55.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 54.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 54.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 54.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 54.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 54.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 54.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 53.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 53.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 53.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 53.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 53.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 52.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 52.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 52.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 52.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 51.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 51.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 51.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 51.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 51.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 51.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 51.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 50.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 50.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 50.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 50.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 50.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 50.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 50.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 50.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 49.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 49.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 49.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 49.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 49.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 49.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 49.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 49.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 48.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 48.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 48.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 48.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 48.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 48.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 47.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 47.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 47.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 46.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 46.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 45.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 45.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 45.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 44.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 44.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 43.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 42.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 42.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 42.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 42.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 42.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 41.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 41.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 41.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 40.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 37.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 37.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 36.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 35.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 35.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 34.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 33.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 30.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 28.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

47.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 47.9
FF:10164-103B2 76 years, female 47.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5.4
Pig sample Sample description nTPM
Caudate
nTPM: 5.4
Samples: 4

Max nTPM: 5.9
Min nTPM: 4.6
Sample A Female 5.9
Sample B Female 5.9
Sample C Male 5.1
Sample D Male 4.6

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