BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:863.1 nTPM
HPA Brain:308.7 nTPM
GTEx:863.1 nTPM
FANTOM5:284.1 Scaled Tags Per Million
Macaque:7.6 nTPM
Mouse:82.7 nTPM
Rat:79.4 nTPM
Pig:19.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 308.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 259.9
1870 Female, age 42, unknown 304.6
2666 Male, age 74, left hemisphere 294.8
1827 Male, age 72, unknown 270.9
2411 Female, age 72, unknown 269.9
1833 Male, age 53, unknown 265.7
1830 Male, age 51, unknown 263.6
2828 Female, age 72, unknown 260.7
2219 Male, age 76, both hemispheres 232.0
2586 Male, age 75, left hemisphere 218.8
2019 Male, age 18, unknown 217.9
Dorsal raphe nucleus
nTPM: 271.5
2298 Female, age 72, unknown 312.2
2016 Female, age 72, unknown 278.6
2750 Male, age 76, both hemispheres 263.7
1828 Male, age 53, unknown 261.5
2047 Male, age 72, unknown 241.3
Inferior colliculus
nTPM: 268.1
2849 Male, age 72, unknown 278.4
1890 Male, age 53, unknown 271.6
1848 Female, age 42, unknown 261.3
2097 Female, age 72, unknown 261.2
Median raphe nucleus
nTPM: 299.4
2220 Male, age 76, midline 299.4
Periaquaductal grey, anterior
nTPM: 257.1
2502 Female, age 75, unknown 285.7
1947 Male, age 18, unknown 251.3
1795 Male, age 51, unknown 234.4
Periaquaductal grey, dorsal
nTPM: 279.1
2850 Male, age 76, both hemispheres 303.0
1840 Male, age 53, unknown 296.5
1831 Male, age 72, unknown 284.5
2464 Female, age 72, unknown 232.3
Periaquaductal grey, lateral
nTPM: 257.4
2053 Male, age 18, unknown 284.0
2140 Male, age 76, both hemispheres 251.1
2272 Male, age 74, both hemispheres 236.9
Pretectal area
nTPM: 242.8
2825 Male, age 18, unknown 280.1
2224 Female, age 72, unknown 275.3
1815 Male, age 53, unknown 262.2
2316 Male, age 76, right hemisphere 262.0
1817 Female, age 42, unknown 242.8
2273 Male, age 74, both hemispheres 239.6
1816 Male, age 51, unknown 230.4
1944 Female, age 72, unknown 227.9
2407 Male, age 75, both hemispheres 226.8
2007 Male, age 72, unknown 222.2
2667 Female, age 75, unknown 201.0
Red nucleus
nTPM: 277.1
1821 Female, age 72, unknown 321.5
2503 Female, age 72, unknown 320.8
1865 Male, age 51, unknown 316.4
2725 Female, age 75, unknown 307.7
1904 Male, age 53, unknown 285.0
1954 Female, age 42, unknown 271.0
2227 Male, age 72, unknown 268.1
2769 Male, age 72, unknown 267.2
2588 Male, age 74, left hemisphere 258.6
2823 Male, age 76, right hemisphere 248.9
2584 Male, age 75, left hemisphere 242.3
2785 Male, age 18, unknown 217.7
Substantia nigra
nTPM: 308.7
2699 Male, age 18, unknown 378.0
2409 Female, age 72, unknown 348.4
2665 Male, age 74, both hemispheres 341.3
2241 Male, age 72, unknown 335.2
1851 Male, age 51, unknown 333.8
1916 Female, age 42, unknown 311.5
2590 Female, age 75, unknown 291.0
1889 Female, age 72, unknown 280.8
1941 Male, age 53, unknown 268.1
2583 Male, age 75, right hemisphere 198.8
Superior colliculus
nTPM: 262.3
2587 Male, age 74, left hemisphere 356.9
1913 Female, age 42, unknown 287.4
1995 Male, age 72, unknown 272.3
1895 Male, age 76, right hemisphere 262.7
2668 Female, age 75, unknown 262.1
1839 Male, age 51, unknown 252.7
2261 Male, age 18, unknown 249.2
1796 Male, age 53, unknown 245.1
2087 Female, age 72, unknown 218.9
2664 Male, age 75, both hemispheres 216.0
Ventral tegmental area
nTPM: 299.8
1915 Female, age 42, unknown 338.1
2223 Female, age 72, unknown 320.2
2410 Female, age 72, unknown 300.2
2021 Male, age 53, unknown 297.6
1942 Male, age 51, unknown 273.9
2218 Male, age 76, both hemispheres 268.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 863.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 863.1
Samples: 183

Max nTPM: 1916.2
Min nTPM: 391.8
Std nTPM: 258.9
Median nTPM: 829.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1916.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1774.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1578.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1565.9
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1494.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1492.2
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1440.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1400.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1354.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1347.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1302.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 284.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 284.1
FF:10158-103A5 76 years, female 284.1

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 7.6
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 5.6
Samples: 1

Max nTPM: 5.6
Min nTPM: 5.6
Sample A 5.6
Midbrain
nTPM: 7.6
Samples: 1

Max nTPM: 7.6
Min nTPM: 7.6
Sample A 7.6
Superior colliculi
nTPM: 7.2
Samples: 1

Max nTPM: 7.2
Min nTPM: 7.2
Sample A 7.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 19.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.9
Samples: 3

Max nTPM: 24.1
Min nTPM: 13.9
Sample A Female 13.9
Sample B Female 24.1
Sample C Male 15.8
Midbrain
nTPM: 18.5
Samples: 3

Max nTPM: 21.9
Min nTPM: 15.6
Sample B Female 21.9
Sample C Male 18.0
Sample D Male 15.6
Periaqueductal gray
nTPM: 19.0
Samples: 3

Max nTPM: 22.2
Min nTPM: 16.1
Sample B Female 22.2
Sample C Male 16.1
Sample D Male 18.6
Superior colliculi
nTPM: 18.1
Samples: 4

Max nTPM: 27.4
Min nTPM: 11.9
Sample A Female 11.9
Sample B Female 27.4
Sample C Male 16.1
Sample D Male 17.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 82.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 82.7
Samples: 4

Max nTPM: 94.6
Min nTPM: 61.4
Sample A 94.6
Sample B 61.4
Sample C 80.3
Sample D 94.3

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 79.4
Rat sample Sample description nTPM
Midbrain
nTPM: 79.4
Samples: 4

Max nTPM: 82.6
Min nTPM: 74.5
Sample A 82.6
Sample A 74.5
Sample A 78.5
Sample A 82.0

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