RPL23
HPA
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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

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  • EVOLUTION

  • RPL23
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:308.7 nTPM
GTEx:863.1 nTPM
FANTOM5:284.1 Scaled Tags Per Million
Macaque:5.6 nTPM
Pig:17.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

308.7
Sample id Sample description nTPM
Substantia nigra
nTPM: 308.7
2699 Male, age 18, unknown 378.0
2409 Female, age 72, unknown 348.4
2665 Male, age 74, both hemispheres 341.3
2241 Male, age 72, unknown 335.2
1851 Male, age 51, unknown 333.8
1916 Female, age 42, unknown 311.5
2590 Female, age 75, unknown 291.0
1889 Female, age 72, unknown 280.8
1941 Male, age 53, unknown 268.1
2583 Male, age 75, right hemisphere 198.8

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

863.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 863.1
Samples: 183

Max nTPM: 1916.2
Min nTPM: 391.8
Std nTPM: 258.9
Median nTPM: 829.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1916.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1774.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1578.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1565.9
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1494.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1492.2
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1440.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1400.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1354.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1347.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1302.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1283.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1281.2
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 1272.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1248.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1248.0
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 1226.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1194.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1194.8
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 1194.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1180.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1172.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1170.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1162.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1152.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 1146.8
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 1139.9
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 1133.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 1120.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1094.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1088.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1087.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1068.0
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 1060.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 1052.4
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 1038.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1033.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1021.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 1019.8
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 1014.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1004.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 995.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 993.5
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 974.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 973.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 965.2
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 963.3
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 962.7
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 961.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 960.0
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 957.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 955.2
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 954.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 952.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 944.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 943.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 942.4
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 942.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 941.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 938.1
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 937.0
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 931.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 931.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 929.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 928.1
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 924.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 922.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 922.0
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 920.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 916.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 915.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 914.5
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 911.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 910.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 906.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 901.1
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 899.3
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 892.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 892.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 879.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 877.5
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 873.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 864.5
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 863.5
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 859.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 858.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 844.7
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 839.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 836.5
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 832.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 831.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 829.8
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 826.7
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 818.9
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 817.7
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 816.1
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 808.8
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 803.2
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 800.5
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 798.0
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 796.7
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 796.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 789.8
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 785.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 785.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 778.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 771.4
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 767.5
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 765.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 759.9
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 754.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 752.9
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 752.0
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 751.0
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 744.8
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 743.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 740.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 738.6
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 735.3
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 730.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 729.9
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 726.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 726.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 723.8
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 723.6
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 723.1
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 722.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 721.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 717.2
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 713.9
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 702.8
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 700.4
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 697.2
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 691.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 684.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 682.7
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 674.0
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 670.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 663.9
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 659.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 658.6
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 651.0
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 650.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 649.9
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 647.3
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 643.9
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 641.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 640.2
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 632.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 629.1
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 625.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 624.8
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 609.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 607.6
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 607.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 607.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 605.1
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 601.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 600.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 594.2
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 590.0
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 589.9
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 588.8
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 584.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 583.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 575.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 556.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 552.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 550.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 548.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 547.4
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 529.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 524.9
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 523.0
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 522.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 522.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 504.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 501.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 500.8
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 499.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 434.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 418.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 391.8
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

284.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 284.1
FF:10158-103A5 76 years, female 284.1

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5.6
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 5.6
Samples: 1

Max nTPM: 5.6
Min nTPM: 5.6
Sample A 5.6

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.9
Samples: 3

Max nTPM: 24.1
Min nTPM: 13.9
Sample A Female 13.9
Sample B Female 24.1
Sample C Male 15.8

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