MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.5 nTPM
HPA Brain:27.5 nTPM
GTEx:17.5 nTPM
FANTOM5:4.0 Scaled Tags Per Million
Pig:37.1 nTPM
Mouse:70.9 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 27.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.1
2666 Male, age 74, left hemisphere 35.6
2828 Female, age 72, unknown 27.7
2219 Male, age 76, both hemispheres 27.5
1827 Male, age 72, unknown 24.0
2586 Male, age 75, left hemisphere 22.1
2019 Male, age 18, unknown 20.1
2411 Female, age 72, unknown 16.1
1870 Female, age 42, unknown 13.2
1833 Male, age 53, unknown 12.5
1830 Male, age 51, unknown 12.4
Dorsal raphe nucleus
nTPM: 17.2
2047 Male, age 72, unknown 20.2
2298 Female, age 72, unknown 19.5
1828 Male, age 53, unknown 18.9
2750 Male, age 76, both hemispheres 17.8
2016 Female, age 72, unknown 9.7
Inferior colliculus
nTPM: 17.0
2097 Female, age 72, unknown 19.9
1848 Female, age 42, unknown 18.0
1890 Male, age 53, unknown 15.2
2849 Male, age 72, unknown 15.0
Median raphe nucleus
nTPM: 22.1
2220 Male, age 76, midline 22.1
Periaquaductal grey, anterior
nTPM: 21.7
1795 Male, age 51, unknown 28.3
2502 Female, age 75, unknown 19.3
1947 Male, age 18, unknown 17.7
Periaquaductal grey, dorsal
nTPM: 14.3
1840 Male, age 53, unknown 15.7
1831 Male, age 72, unknown 15.6
2464 Female, age 72, unknown 14.1
2850 Male, age 76, both hemispheres 11.8
Periaquaductal grey, lateral
nTPM: 12.1
2053 Male, age 18, unknown 14.9
2140 Male, age 76, both hemispheres 10.9
2272 Male, age 74, both hemispheres 10.5
Pretectal area
nTPM: 24.0
1816 Male, age 51, unknown 43.2
1944 Female, age 72, unknown 38.9
2007 Male, age 72, unknown 35.7
1817 Female, age 42, unknown 33.4
1815 Male, age 53, unknown 28.5
2667 Female, age 75, unknown 22.4
2224 Female, age 72, unknown 14.0
2825 Male, age 18, unknown 14.0
2407 Male, age 75, both hemispheres 13.1
2273 Male, age 74, both hemispheres 10.3
2316 Male, age 76, right hemisphere 10.2
Red nucleus
nTPM: 12.6
2785 Male, age 18, unknown 21.6
2584 Male, age 75, left hemisphere 19.9
1954 Female, age 42, unknown 12.6
1821 Female, age 72, unknown 12.4
2588 Male, age 74, left hemisphere 12.2
2823 Male, age 76, right hemisphere 11.6
2503 Female, age 72, unknown 11.4
1865 Male, age 51, unknown 11.3
2769 Male, age 72, unknown 11.0
2227 Male, age 72, unknown 10.7
1904 Male, age 53, unknown 10.2
2725 Female, age 75, unknown 5.9
Substantia nigra
nTPM: 27.5
2665 Male, age 74, both hemispheres 47.6
1941 Male, age 53, unknown 39.5
1916 Female, age 42, unknown 37.8
1851 Male, age 51, unknown 28.2
1889 Female, age 72, unknown 28.2
2583 Male, age 75, right hemisphere 22.0
2241 Male, age 72, unknown 19.8
2409 Female, age 72, unknown 18.4
2699 Male, age 18, unknown 17.6
2590 Female, age 75, unknown 15.6
Superior colliculus
nTPM: 25.4
2668 Female, age 75, unknown 72.3
2087 Female, age 72, unknown 34.1
2261 Male, age 18, unknown 26.2
1796 Male, age 53, unknown 23.5
1895 Male, age 76, right hemisphere 19.7
2664 Male, age 75, both hemispheres 19.1
1913 Female, age 42, unknown 17.5
1995 Male, age 72, unknown 14.5
1839 Male, age 51, unknown 14.0
2587 Male, age 74, left hemisphere 12.8
Ventral tegmental area
nTPM: 21.0
2218 Male, age 76, both hemispheres 29.5
2410 Female, age 72, unknown 24.4
1915 Female, age 42, unknown 23.6
1942 Male, age 51, unknown 18.0
2223 Female, age 72, unknown 15.5
2021 Male, age 53, unknown 15.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.5
Samples: 183

Max nTPM: 72.3
Min nTPM: 1.2
Std nTPM: 12.6
Median nTPM: 14.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 72.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 53.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 46.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 45.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 42.9
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 42.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 42.3
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 42.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 41.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 41.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 40.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 4.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.0
FF:10158-103A5 76 years, female 4.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 37.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.1
Samples: 4

Max nTPM: 41.0
Min nTPM: 13.6
Sample A Female 41.0
Sample B Female 19.3
Sample C Male 38.6
Sample D Male 13.6
Midbrain
nTPM: 31.5
Samples: 4

Max nTPM: 53.3
Min nTPM: 9.1
Sample A Female 9.1
Sample B Female 23.7
Sample C Male 53.3
Sample D Male 39.9
Periaqueductal gray
nTPM: 22.4
Samples: 3

Max nTPM: 29.6
Min nTPM: 16.6
Sample B Female 21.1
Sample C Male 29.6
Sample D Male 16.6
Superior colliculi
nTPM: 37.2
Samples: 4

Max nTPM: 47.5
Min nTPM: 27.0
Sample A Female 38.5
Sample B Female 27.0
Sample C Male 47.5
Sample D Male 35.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 70.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 70.9
Samples: 4

Max nTPM: 75.4
Min nTPM: 66.7
Sample A Male 71.6
Sample B Male 69.7
Sample C Female 66.7
Sample D Female 75.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68148750 Antisense, RP_041116_02_B02, Mouse strain C57BL/6J (56 days, male) 0.6
909 Antisense, RP_Baylor_103010, Mouse strain C57BL/6J (56 days, male) 0.1

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