MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.7 nTPM
HPA Brain:91.5 nTPM
GTEx:36.7 nTPM
FANTOM5:85.7 Scaled Tags Per Million
Pig:64.7 nTPM
Mouse:120.1 nTPM
Allen mouse:5.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 91.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.0
2219 Male, age 76, both hemispheres 109.0
2411 Female, age 72, unknown 98.6
2019 Male, age 18, unknown 96.6
2666 Male, age 74, left hemisphere 87.2
1833 Male, age 53, unknown 86.4
1830 Male, age 51, unknown 86.2
2586 Male, age 75, left hemisphere 78.2
1870 Female, age 42, unknown 75.1
1827 Male, age 72, unknown 67.1
2828 Female, age 72, unknown 65.5
Dorsal raphe nucleus
nTPM: 80.1
2750 Male, age 76, both hemispheres 93.5
2047 Male, age 72, unknown 87.9
1828 Male, age 53, unknown 85.6
2298 Female, age 72, unknown 72.1
2016 Female, age 72, unknown 61.5
Inferior colliculus
nTPM: 69.4
1848 Female, age 42, unknown 75.4
1890 Male, age 53, unknown 74.1
2097 Female, age 72, unknown 64.7
2849 Male, age 72, unknown 63.5
Median raphe nucleus
nTPM: 91.5
2220 Male, age 76, midline 91.5
Periaquaductal grey, anterior
nTPM: 67.6
2502 Female, age 75, unknown 69.4
1947 Male, age 18, unknown 68.8
1795 Male, age 51, unknown 64.7
Periaquaductal grey, dorsal
nTPM: 61.8
2464 Female, age 72, unknown 69.9
1831 Male, age 72, unknown 68.5
1840 Male, age 53, unknown 59.7
2850 Male, age 76, both hemispheres 49.3
Periaquaductal grey, lateral
nTPM: 63.4
2272 Male, age 74, both hemispheres 76.9
2053 Male, age 18, unknown 58.0
2140 Male, age 76, both hemispheres 55.1
Pretectal area
nTPM: 72.3
2007 Male, age 72, unknown 87.7
1944 Female, age 72, unknown 81.4
1817 Female, age 42, unknown 79.2
1815 Male, age 53, unknown 77.4
2407 Male, age 75, both hemispheres 72.0
2316 Male, age 76, right hemisphere 70.0
2224 Female, age 72, unknown 68.5
2825 Male, age 18, unknown 67.2
1816 Male, age 51, unknown 67.1
2667 Female, age 75, unknown 65.1
2273 Male, age 74, both hemispheres 59.7
Red nucleus
nTPM: 89.1
2588 Male, age 74, left hemisphere 99.3
2725 Female, age 75, unknown 99.3
2785 Male, age 18, unknown 97.1
1904 Male, age 53, unknown 91.8
2823 Male, age 76, right hemisphere 89.6
1865 Male, age 51, unknown 89.2
1821 Female, age 72, unknown 88.6
2503 Female, age 72, unknown 88.3
2769 Male, age 72, unknown 88.2
2584 Male, age 75, left hemisphere 86.1
2227 Male, age 72, unknown 85.9
1954 Female, age 42, unknown 65.5
Substantia nigra
nTPM: 90.9
1916 Female, age 42, unknown 106.7
1851 Male, age 51, unknown 105.2
2241 Male, age 72, unknown 96.5
1941 Male, age 53, unknown 95.2
2665 Male, age 74, both hemispheres 92.9
2699 Male, age 18, unknown 92.3
1889 Female, age 72, unknown 88.5
2409 Female, age 72, unknown 82.8
2583 Male, age 75, right hemisphere 78.1
2590 Female, age 75, unknown 70.3
Superior colliculus
nTPM: 75.7
2668 Female, age 75, unknown 92.2
1895 Male, age 76, right hemisphere 90.0
1913 Female, age 42, unknown 80.4
2587 Male, age 74, left hemisphere 80.0
2087 Female, age 72, unknown 77.8
1839 Male, age 51, unknown 74.7
1796 Male, age 53, unknown 70.2
2261 Male, age 18, unknown 66.0
1995 Male, age 72, unknown 65.5
2664 Male, age 75, both hemispheres 59.9
Ventral tegmental area
nTPM: 86.4
2410 Female, age 72, unknown 116.9
2218 Male, age 76, both hemispheres 93.6
1915 Female, age 42, unknown 86.1
1942 Male, age 51, unknown 79.4
2223 Female, age 72, unknown 75.5
2021 Male, age 53, unknown 66.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 36.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.7
Samples: 183

Max nTPM: 92.0
Min nTPM: 8.8
Std nTPM: 16.5
Median nTPM: 32.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 92.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 91.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 83.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 81.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 77.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 76.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 75.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 74.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 72.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 71.6
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 69.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 85.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 85.7
FF:10158-103A5 76 years, female 85.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 64.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 61.2
Samples: 4

Max nTPM: 66.7
Min nTPM: 47.0
Sample A Female 66.7
Sample B Female 47.0
Sample C Male 65.4
Sample D Male 65.5
Midbrain
nTPM: 62.0
Samples: 4

Max nTPM: 76.6
Min nTPM: 53.1
Sample A Female 76.6
Sample B Female 62.9
Sample C Male 55.3
Sample D Male 53.1
Periaqueductal gray
nTPM: 48.6
Samples: 3

Max nTPM: 55.4
Min nTPM: 42.7
Sample B Female 55.4
Sample C Male 47.6
Sample D Male 42.7
Superior colliculi
nTPM: 64.7
Samples: 4

Max nTPM: 68.1
Min nTPM: 61.4
Sample A Female 66.3
Sample B Female 62.8
Sample C Male 68.1
Sample D Male 61.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 120.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 120.1
Samples: 4

Max nTPM: 134.2
Min nTPM: 111.7
Sample A Male 134.2
Sample B Male 111.7
Sample C Female 112.5
Sample D Female 122.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.5
69014854 Antisense, RP_050310_01_H01, Mouse strain C57BL/6J (56 days, male) 5.5

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