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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:105.8 nTPM
HPA Brain:125.8 nTPM
GTEx:105.8 nTPM
FANTOM5:233.4 Scaled Tags Per Million
Pig:122.5 nTPM
Mouse:292.5 nTPM
Allen mouse:22.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.8
Sample id Sample description nTPM
Amygdala
nTPM: 81.9
1987 Female, age 91, left hemisphere 109.9
2814 Male, age 76, right hemisphere 102.3
2517 Female, age 94, left hemisphere 90.5
2514 Male, age 75, right hemisphere 55.7
2695 Female, age 67, right hemisphere 50.9
Basal amygdala
nTPM: 116.3
2243 Female, age 91, right hemisphere 178.9
2110 Male, age 80, left hemisphere 167.8
2685 Female, age 94, left hemisphere 122.3
1955 Male, age 76, both hemispheres 106.7
2827 Female, age 67, right hemisphere 64.6
2609 Male, age 75, right hemisphere 57.2
Central amygdala
nTPM: 94.1
2239 Male, age 80, left hemisphere 130.2
2701 Female, age 91, right hemisphere 101.0
1905 Male, age 76, both hemispheres 92.2
2826 Female, age 94, left hemisphere 88.5
2515 Male, age 75, right hemisphere 58.8
Corticomedial amygdala
nTPM: 125.8
2829 Male, age 80, left hemisphere 191.5
2242 Female, age 91, right hemisphere 158.1
2429 Female, age 94, left hemisphere 149.0
2240 Male, age 76, both hemispheres 114.1
2535 Female, age 67, right hemisphere 81.6
2428 Male, age 75, right hemisphere 60.8
Lateral amygdala
nTPM: 86.1
2534 Female, age 94, left hemisphere 122.3
1883 Male, age 76, both hemispheres 117.2
2256 Male, age 80, left hemisphere 86.3
2255 Female, age 91, right hemisphere 84.7
2830 Female, age 67, right hemisphere 54.2
2516 Male, age 75, right hemisphere 51.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

105.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 105.8
Samples: 181

Max nTPM: 263.9
Min nTPM: 17.2
Std nTPM: 58.2
Median nTPM: 96.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 263.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 256.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 253.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 240.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 240.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 239.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 226.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 224.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 221.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 219.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 219.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 218.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 215.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 200.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 197.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 195.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 189.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 187.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 187.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 182.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 179.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 178.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 178.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 177.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 174.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 172.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 169.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 167.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 165.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 165.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 164.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 163.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 159.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 158.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 158.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 154.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 154.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 154.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 154.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 152.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 151.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 149.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 147.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 145.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 144.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 144.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 142.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 139.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 137.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 137.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 137.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 136.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 136.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 134.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 134.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 133.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 133.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 133.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 130.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 130.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 129.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 128.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 128.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 127.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 127.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 125.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 125.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 124.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 119.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 118.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 118.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 118.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 117.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 115.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 113.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 111.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 110.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 108.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 107.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 106.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 106.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 104.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 103.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 103.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 103.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 100.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 98.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 97.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 97.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 96.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 96.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 94.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 93.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 92.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 91.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 90.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 88.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 87.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 87.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 87.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 87.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 86.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 84.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 84.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 84.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 83.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 83.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 83.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 81.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 80.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 79.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 78.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 76.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 76.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 76.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 75.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 75.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 74.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 74.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 70.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 66.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 66.0
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 64.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 62.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 62.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 62.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 60.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 59.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 58.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 58.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 57.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 56.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 56.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 56.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 56.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 56.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 56.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 54.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 54.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 53.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 52.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 52.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 52.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 51.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 50.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 50.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 49.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 48.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 48.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 46.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 46.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 46.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 45.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 45.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 44.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 44.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 44.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 42.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 41.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 41.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 40.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 40.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 38.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 38.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 37.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 36.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 35.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 35.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 34.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 34.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 34.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 32.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 31.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 30.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 30.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 28.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 26.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 21.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 21.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 20.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 17.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

233.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 233.4
FF:10151-102I7 76 years, female 233.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.5
Pig sample Sample description nTPM
Amygdala
nTPM: 122.5
Samples: 4

Max nTPM: 199.3
Min nTPM: 76.8
Sample A Female 199.3
Sample B Female 76.8
Sample C Male 93.8
Sample D Male 120.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

292.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 292.5
Samples: 4

Max nTPM: 328.0
Min nTPM: 256.6
Sample A Male 328.0
Sample B Male 296.3
Sample C Female 256.6
Sample D Female 289.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.9
68924401 Antisense, RP_050303_02_C08, Mouse strain C57BL/6J (56 days, male) 23.1
75651234 Antisense, RP_060518_01_D12, Mouse strain C57BL/6J (56 days, male) 22.7

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