MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:75.1 nTPM
HPA Brain:117.6 nTPM
GTEx:75.1 nTPM
FANTOM5:26.9 Scaled Tags Per Million
Pig:85.1 nTPM
Mouse:262.5 nTPM
Allen mouse:19.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 117.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.3
2666 Male, age 74, left hemisphere 114.7
1827 Male, age 72, unknown 114.6
2411 Female, age 72, unknown 110.7
2219 Male, age 76, both hemispheres 101.8
1870 Female, age 42, unknown 82.9
2019 Male, age 18, unknown 82.2
1833 Male, age 53, unknown 75.7
1830 Male, age 51, unknown 73.0
2586 Male, age 75, left hemisphere 68.7
2828 Female, age 72, unknown 68.4
Dorsal raphe nucleus
nTPM: 91.0
2298 Female, age 72, unknown 126.4
2047 Male, age 72, unknown 93.2
1828 Male, age 53, unknown 85.7
2750 Male, age 76, both hemispheres 84.0
2016 Female, age 72, unknown 65.6
Inferior colliculus
nTPM: 93.1
2097 Female, age 72, unknown 112.3
1848 Female, age 42, unknown 93.0
2849 Male, age 72, unknown 88.9
1890 Male, age 53, unknown 78.3
Median raphe nucleus
nTPM: 113.0
2220 Male, age 76, midline 113.0
Periaquaductal grey, anterior
nTPM: 99.3
1947 Male, age 18, unknown 114.6
2502 Female, age 75, unknown 93.4
1795 Male, age 51, unknown 89.8
Periaquaductal grey, dorsal
nTPM: 81.0
1840 Male, age 53, unknown 99.6
2464 Female, age 72, unknown 82.4
2850 Male, age 76, both hemispheres 73.0
1831 Male, age 72, unknown 68.9
Periaquaductal grey, lateral
nTPM: 71.1
2272 Male, age 74, both hemispheres 75.5
2053 Male, age 18, unknown 71.6
2140 Male, age 76, both hemispheres 66.1
Pretectal area
nTPM: 94.3
2007 Male, age 72, unknown 125.6
1816 Male, age 51, unknown 123.5
1944 Female, age 72, unknown 116.8
2224 Female, age 72, unknown 112.8
1817 Female, age 42, unknown 108.3
1815 Male, age 53, unknown 91.4
2825 Male, age 18, unknown 81.8
2667 Female, age 75, unknown 73.5
2273 Male, age 74, both hemispheres 69.8
2407 Male, age 75, both hemispheres 69.1
2316 Male, age 76, right hemisphere 64.5
Red nucleus
nTPM: 69.0
1821 Female, age 72, unknown 100.3
2725 Female, age 75, unknown 79.5
2584 Male, age 75, left hemisphere 76.1
1954 Female, age 42, unknown 75.7
2785 Male, age 18, unknown 74.8
2588 Male, age 74, left hemisphere 64.9
2227 Male, age 72, unknown 64.2
2769 Male, age 72, unknown 62.4
1865 Male, age 51, unknown 58.8
2823 Male, age 76, right hemisphere 57.7
1904 Male, age 53, unknown 57.1
2503 Female, age 72, unknown 56.4
Substantia nigra
nTPM: 117.6
1941 Male, age 53, unknown 177.7
1916 Female, age 42, unknown 162.9
2241 Male, age 72, unknown 146.2
1851 Male, age 51, unknown 126.9
1889 Female, age 72, unknown 121.2
2409 Female, age 72, unknown 118.6
2665 Male, age 74, both hemispheres 92.8
2699 Male, age 18, unknown 88.9
2590 Female, age 75, unknown 74.4
2583 Male, age 75, right hemisphere 66.9
Superior colliculus
nTPM: 86.0
2668 Female, age 75, unknown 139.7
1895 Male, age 76, right hemisphere 99.8
1796 Male, age 53, unknown 98.5
2087 Female, age 72, unknown 98.4
2261 Male, age 18, unknown 96.0
1839 Male, age 51, unknown 88.1
2664 Male, age 75, both hemispheres 70.1
2587 Male, age 74, left hemisphere 69.6
1913 Female, age 42, unknown 53.7
1995 Male, age 72, unknown 46.4
Ventral tegmental area
nTPM: 105.9
2218 Male, age 76, both hemispheres 132.8
2410 Female, age 72, unknown 127.8
1915 Female, age 42, unknown 123.2
1942 Male, age 51, unknown 96.1
2223 Female, age 72, unknown 81.6
2021 Male, age 53, unknown 73.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 75.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.1
Samples: 183

Max nTPM: 452.2
Min nTPM: 11.6
Std nTPM: 69.5
Median nTPM: 48.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 452.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 355.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 295.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 280.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 254.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 252.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 238.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 234.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 217.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 202.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 199.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 26.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.9
FF:10158-103A5 76 years, female 26.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 85.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 85.1
Samples: 4

Max nTPM: 138.2
Min nTPM: 23.4
Sample A Female 138.2
Sample B Female 60.9
Sample C Male 117.7
Sample D Male 23.4
Midbrain
nTPM: 67.1
Samples: 4

Max nTPM: 112.8
Min nTPM: 28.2
Sample A Female 28.2
Sample B Female 75.1
Sample C Male 52.1
Sample D Male 112.8
Periaqueductal gray
nTPM: 81.8
Samples: 3

Max nTPM: 101.6
Min nTPM: 68.3
Sample B Female 75.5
Sample C Male 101.6
Sample D Male 68.3
Superior colliculi
nTPM: 73.8
Samples: 4

Max nTPM: 108.9
Min nTPM: 38.6
Sample A Female 108.9
Sample B Female 38.6
Sample C Male 52.8
Sample D Male 94.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 262.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 262.5
Samples: 4

Max nTPM: 278.3
Min nTPM: 247.6
Sample A Male 247.6
Sample B Male 278.3
Sample C Female 269.2
Sample D Female 254.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 19.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.0
68924401 Antisense, RP_050303_02_C08, Mouse strain C57BL/6J (56 days, male) 20.7
75651234 Antisense, RP_060518_01_D12, Mouse strain C57BL/6J (56 days, male) 17.3

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