We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MMP24OS
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • MMP24OS
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:55.1 nTPM
HPA Brain:98.5 nTPM
GTEx:55.1 nTPM
FANTOM5:204.9 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.5
Sample id Sample description nTPM
Amygdala
nTPM: 82.3
2695 Female, age 67, right hemisphere 108.8
2814 Male, age 76, right hemisphere 105.5
2517 Female, age 94, left hemisphere 74.9
2514 Male, age 75, right hemisphere 64.0
1987 Female, age 91, left hemisphere 58.3
Basal amygdala
nTPM: 98.5
2827 Female, age 67, right hemisphere 115.3
2685 Female, age 94, left hemisphere 103.7
2609 Male, age 75, right hemisphere 102.4
2243 Female, age 91, right hemisphere 102.3
1955 Male, age 76, both hemispheres 90.4
2110 Male, age 80, left hemisphere 77.3
Central amygdala
nTPM: 97.8
2826 Female, age 94, left hemisphere 134.3
2239 Male, age 80, left hemisphere 96.5
2701 Female, age 91, right hemisphere 94.8
1905 Male, age 76, both hemispheres 86.2
2515 Male, age 75, right hemisphere 77.4
Corticomedial amygdala
nTPM: 85.9
2535 Female, age 67, right hemisphere 108.0
2242 Female, age 91, right hemisphere 99.0
2829 Male, age 80, left hemisphere 95.0
2240 Male, age 76, both hemispheres 74.9
2428 Male, age 75, right hemisphere 70.0
2429 Female, age 94, left hemisphere 68.8
Lateral amygdala
nTPM: 91.8
2830 Female, age 67, right hemisphere 107.6
2534 Female, age 94, left hemisphere 99.9
2255 Female, age 91, right hemisphere 90.7
1883 Male, age 76, both hemispheres 89.5
2256 Male, age 80, left hemisphere 83.9
2516 Male, age 75, right hemisphere 79.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 55.1
Samples: 181

Max nTPM: 126.6
Min nTPM: 24.4
Std nTPM: 15.2
Median nTPM: 53.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 126.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 106.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 93.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 90.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 85.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 84.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 80.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 80.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 78.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 78.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 77.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 77.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 77.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 76.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 76.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 76.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 74.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 74.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 73.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 73.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 73.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 73.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 73.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 72.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 72.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 72.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 71.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 70.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 70.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 70.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 69.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 69.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 69.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 68.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 68.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 67.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 66.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 66.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 65.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 65.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 65.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 65.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 64.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 64.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 64.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 64.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 64.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 64.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 64.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 63.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 63.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 63.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 63.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 62.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 61.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 61.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 61.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 61.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 61.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 60.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 60.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 60.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 60.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 60.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 60.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 60.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 59.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 59.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 59.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 59.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 58.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 58.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 57.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 56.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 56.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 56.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 56.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 55.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 55.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 55.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 55.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 54.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 54.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 54.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 54.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 54.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 54.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 54.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 53.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 53.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 53.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 53.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 52.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 52.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 52.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 51.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 51.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 51.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 51.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 51.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 51.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 50.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 50.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 50.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 50.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 50.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 50.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 50.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 50.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 50.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 50.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 50.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 49.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 49.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 49.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 49.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 48.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 48.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 47.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 47.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 47.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 47.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 47.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 46.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 46.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 46.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 46.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 46.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 46.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 46.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 45.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 45.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 45.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 45.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 45.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 44.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 44.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 44.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 43.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 43.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 43.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 43.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 43.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 43.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 42.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 41.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 41.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 41.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 41.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 41.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 41.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 40.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 40.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 40.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 40.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 39.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 39.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 38.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 38.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 38.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 37.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 37.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 37.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 36.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 35.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 35.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 35.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 35.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 34.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 34.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 34.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 34.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 33.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 32.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 31.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 31.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 28.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 27.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 26.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 25.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 24.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

204.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 204.9
FF:10151-102I7 76 years, female 204.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo