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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
332.1
nTPM
HPA Brain:
418.1
nTPM
GTEx:
332.1
nTPM
FANTOM5:
177.3
Scaled Tags Per Million
Pig:
232.1
nTPM
Mouse:
310.9
nTPM
Allen mouse:
19.7
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
418.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 342.5
2666
Male, age 74, left hemisphere
405.8
1827
Male, age 72, unknown
382.1
2586
Male, age 75, left hemisphere
378.5
2411
Female, age 72, unknown
368.2
2019
Male, age 18, unknown
345.3
2219
Male, age 76, both hemispheres
338.1
2828
Female, age 72, unknown
332.3
1870
Female, age 42, unknown
313.2
1830
Male, age 51, unknown
291.3
1833
Male, age 53, unknown
270.0
Dorsal raphe nucleus nTPM: 343.5
2047
Male, age 72, unknown
411.5
2298
Female, age 72, unknown
361.1
2750
Male, age 76, both hemispheres
361.0
1828
Male, age 53, unknown
346.6
2016
Female, age 72, unknown
237.3
Inferior colliculus nTPM: 270.1
2097
Female, age 72, unknown
280.9
1890
Male, age 53, unknown
273.4
1848
Female, age 42, unknown
272.3
2849
Male, age 72, unknown
253.9
Median raphe nucleus nTPM: 364.7
2220
Male, age 76, midline
364.7
Periaquaductal grey, anterior nTPM: 349.0
1795
Male, age 51, unknown
384.0
1947
Male, age 18, unknown
374.3
2502
Female, age 75, unknown
288.7
Periaquaductal grey, dorsal nTPM: 259.2
1831
Male, age 72, unknown
271.6
2464
Female, age 72, unknown
261.2
1840
Male, age 53, unknown
259.3
2850
Male, age 76, both hemispheres
244.7
Periaquaductal grey, lateral nTPM: 265.7
2053
Male, age 18, unknown
279.5
2272
Male, age 74, both hemispheres
274.4
2140
Male, age 76, both hemispheres
243.1
Pretectal area nTPM: 358.1
1816
Male, age 51, unknown
486.0
2007
Male, age 72, unknown
471.4
1944
Female, age 72, unknown
429.3
1817
Female, age 42, unknown
414.0
1815
Male, age 53, unknown
362.6
2407
Male, age 75, both hemispheres
350.0
2667
Female, age 75, unknown
312.0
2825
Male, age 18, unknown
299.0
2224
Female, age 72, unknown
293.8
2273
Male, age 74, both hemispheres
265.6
2316
Male, age 76, right hemisphere
255.6
Red nucleus nTPM: 316.2
2588
Male, age 74, left hemisphere
408.8
2584
Male, age 75, left hemisphere
374.2
2725
Female, age 75, unknown
356.8
2785
Male, age 18, unknown
339.3
2503
Female, age 72, unknown
316.4
1821
Female, age 72, unknown
310.5
2823
Male, age 76, right hemisphere
302.6
1865
Male, age 51, unknown
295.6
1954
Female, age 42, unknown
280.8
2227
Male, age 72, unknown
272.6
2769
Male, age 72, unknown
271.0
1904
Male, age 53, unknown
265.4
Substantia nigra nTPM: 418.1
1941
Male, age 53, unknown
629.7
1916
Female, age 42, unknown
518.8
1851
Male, age 51, unknown
418.8
2241
Male, age 72, unknown
410.9
2409
Female, age 72, unknown
405.9
1889
Female, age 72, unknown
396.0
2665
Male, age 74, both hemispheres
373.7
2583
Male, age 75, right hemisphere
368.3
2590
Female, age 75, unknown
333.6
2699
Male, age 18, unknown
325.5
Superior colliculus nTPM: 329.6
2668
Female, age 75, unknown
469.6
2087
Female, age 72, unknown
383.3
2261
Male, age 18, unknown
380.6
1796
Male, age 53, unknown
348.3
2587
Male, age 74, left hemisphere
331.5
2664
Male, age 75, both hemispheres
314.1
1895
Male, age 76, right hemisphere
287.4
1839
Male, age 51, unknown
276.6
1913
Female, age 42, unknown
268.2
1995
Male, age 72, unknown
236.0
Ventral tegmental area nTPM: 352.4
2410
Female, age 72, unknown
398.6
1915
Female, age 42, unknown
381.1
2218
Male, age 76, both hemispheres
375.6
2223
Female, age 72, unknown
344.5
1942
Male, age 51, unknown
322.3
2021
Male, age 53, unknown
292.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
332.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 332.1
Samples: 139
Max nTPM: 1391.4
Min nTPM: 135.5
Std nTPM: 149.7
Median nTPM: 302.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
1391.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
848.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
801.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
668.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
610.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
560.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
539.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
526.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
512.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
505.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
503.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
492.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
486.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
484.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
473.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
455.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
454.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
450.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
449.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
447.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
446.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
445.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
442.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
435.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
434.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
432.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
425.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
423.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
422.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
419.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
414.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
407.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
406.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
391.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
388.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
382.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
380.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
378.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
377.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
370.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
368.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
368.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
366.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
364.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
362.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
358.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
350.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
349.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
344.7
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
343.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
343.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
340.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
338.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
336.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
334.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
334.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
332.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
331.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
328.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
327.8
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
326.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
325.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
323.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
318.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
316.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
313.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
312.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
308.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
304.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
302.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
302.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
294.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
294.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
293.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
291.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
290.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
289.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
288.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
285.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
284.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
282.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
280.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
278.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
277.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
276.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
276.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
275.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
274.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
273.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
267.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
263.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
262.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
257.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
255.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
254.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
253.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
246.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
245.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
244.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
243.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
243.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
243.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
241.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
237.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
237.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
236.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
236.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
235.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
234.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
234.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
232.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
231.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
229.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
227.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
226.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
224.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
218.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
218.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
214.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
214.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
211.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
206.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
203.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
201.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
199.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
195.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
191.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
190.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
180.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
179.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
173.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
169.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
168.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
167.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
165.9
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
160.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
148.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
136.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
135.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
310.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 310.9
Samples: 4
Max nTPM: 324.8
Min nTPM: 288.7
Sample A
Male
324.8
Sample B
Male
320.6
Sample C
Female
309.6
Sample D
Female
288.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.