MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:331.8 nTPM
HPA Brain:418.1 nTPM
GTEx:331.8 nTPM
FANTOM5:177.3 Scaled Tags Per Million
Pig:232.1 nTPM
Mouse:310.9 nTPM
Allen mouse:19.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 418.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 342.5
2666 Male, age 74, left hemisphere 405.8
1827 Male, age 72, unknown 382.1
2586 Male, age 75, left hemisphere 378.5
2411 Female, age 72, unknown 368.2
2019 Male, age 18, unknown 345.3
2219 Male, age 76, both hemispheres 338.1
2828 Female, age 72, unknown 332.3
1870 Female, age 42, unknown 313.2
1830 Male, age 51, unknown 291.3
1833 Male, age 53, unknown 270.0
Dorsal raphe nucleus
nTPM: 343.5
2047 Male, age 72, unknown 411.5
2298 Female, age 72, unknown 361.1
2750 Male, age 76, both hemispheres 361.0
1828 Male, age 53, unknown 346.6
2016 Female, age 72, unknown 237.3
Inferior colliculus
nTPM: 270.1
2097 Female, age 72, unknown 280.9
1890 Male, age 53, unknown 273.4
1848 Female, age 42, unknown 272.3
2849 Male, age 72, unknown 253.9
Median raphe nucleus
nTPM: 364.7
2220 Male, age 76, midline 364.7
Periaquaductal grey, anterior
nTPM: 349.0
1795 Male, age 51, unknown 384.0
1947 Male, age 18, unknown 374.3
2502 Female, age 75, unknown 288.7
Periaquaductal grey, dorsal
nTPM: 259.2
1831 Male, age 72, unknown 271.6
2464 Female, age 72, unknown 261.2
1840 Male, age 53, unknown 259.3
2850 Male, age 76, both hemispheres 244.7
Periaquaductal grey, lateral
nTPM: 265.7
2053 Male, age 18, unknown 279.5
2272 Male, age 74, both hemispheres 274.4
2140 Male, age 76, both hemispheres 243.1
Pretectal area
nTPM: 358.1
1816 Male, age 51, unknown 486.0
2007 Male, age 72, unknown 471.4
1944 Female, age 72, unknown 429.3
1817 Female, age 42, unknown 414.0
1815 Male, age 53, unknown 362.6
2407 Male, age 75, both hemispheres 350.0
2667 Female, age 75, unknown 312.0
2825 Male, age 18, unknown 299.0
2224 Female, age 72, unknown 293.8
2273 Male, age 74, both hemispheres 265.6
2316 Male, age 76, right hemisphere 255.6
Red nucleus
nTPM: 316.2
2588 Male, age 74, left hemisphere 408.8
2584 Male, age 75, left hemisphere 374.2
2725 Female, age 75, unknown 356.8
2785 Male, age 18, unknown 339.3
2503 Female, age 72, unknown 316.4
1821 Female, age 72, unknown 310.5
2823 Male, age 76, right hemisphere 302.6
1865 Male, age 51, unknown 295.6
1954 Female, age 42, unknown 280.8
2227 Male, age 72, unknown 272.6
2769 Male, age 72, unknown 271.0
1904 Male, age 53, unknown 265.4
Substantia nigra
nTPM: 418.1
1941 Male, age 53, unknown 629.7
1916 Female, age 42, unknown 518.8
1851 Male, age 51, unknown 418.8
2241 Male, age 72, unknown 410.9
2409 Female, age 72, unknown 405.9
1889 Female, age 72, unknown 396.0
2665 Male, age 74, both hemispheres 373.7
2583 Male, age 75, right hemisphere 368.3
2590 Female, age 75, unknown 333.6
2699 Male, age 18, unknown 325.5
Superior colliculus
nTPM: 329.6
2668 Female, age 75, unknown 469.6
2087 Female, age 72, unknown 383.3
2261 Male, age 18, unknown 380.6
1796 Male, age 53, unknown 348.3
2587 Male, age 74, left hemisphere 331.5
2664 Male, age 75, both hemispheres 314.1
1895 Male, age 76, right hemisphere 287.4
1839 Male, age 51, unknown 276.6
1913 Female, age 42, unknown 268.2
1995 Male, age 72, unknown 236.0
Ventral tegmental area
nTPM: 352.4
2410 Female, age 72, unknown 398.6
1915 Female, age 42, unknown 381.1
2218 Male, age 76, both hemispheres 375.6
2223 Female, age 72, unknown 344.5
1942 Male, age 51, unknown 322.3
2021 Male, age 53, unknown 292.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 331.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 331.8
Samples: 183

Max nTPM: 1363.6
Min nTPM: 107.8
Std nTPM: 146.5
Median nTPM: 301.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1363.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 830.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 791.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 764.1
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 735.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 655.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 653.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 590.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 589.9
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 583.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 550.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 177.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 177.3
FF:10158-103A5 76 years, female 177.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 232.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 209.4
Samples: 4

Max nTPM: 266.1
Min nTPM: 162.0
Sample A Female 266.1
Sample B Female 163.1
Sample C Male 246.4
Sample D Male 162.0
Midbrain
nTPM: 232.1
Samples: 4

Max nTPM: 305.3
Min nTPM: 181.7
Sample A Female 214.1
Sample B Female 181.7
Sample C Male 305.3
Sample D Male 227.3
Periaqueductal gray
nTPM: 155.7
Samples: 3

Max nTPM: 177.5
Min nTPM: 137.3
Sample B Female 152.3
Sample C Male 177.5
Sample D Male 137.3
Superior colliculi
nTPM: 227.5
Samples: 4

Max nTPM: 317.2
Min nTPM: 151.7
Sample A Female 213.6
Sample B Female 151.7
Sample C Male 317.2
Sample D Male 227.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 310.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 310.9
Samples: 4

Max nTPM: 324.8
Min nTPM: 288.7
Sample A Male 324.8
Sample B Male 320.6
Sample C Female 309.6
Sample D Female 288.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 19.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.7
68844845 Antisense, RP_050222_02_E10, Mouse strain C57BL/6J (56 days, male) 19.7

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