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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:215.6 nTPM
HPA Brain:111.5 nTPM
GTEx:215.6 nTPM
FANTOM5:301.5 Scaled Tags Per Million
Pig:149.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 96.2
1981 Female, age 72, midline 138.2
2048 Male, age 55, midline 100.9
2194 Female, age 79, both hemispheres 83.8
2816 Male, age 47, midline 83.8
2565 Male, age 75, midline 74.2
Cervical spinal cord, dorsal horn
nTPM: 111.5
2173 Female, age 72, unknown 162.7
2296 Male, age 66, both hemispheres 151.4
2069 Male, age 47, both hemispheres 120.8
1877 Male, age 55, unknown 83.1
2721 Male, age 90, both hemispheres 77.4
2297 Male, age 75, both hemispheres 73.4
Cervical spinal cord, ventral horn
nTPM: 104.2
2098 Female, age 72, unknown 141.0
2480 Male, age 75, both hemispheres 110.7
2295 Male, age 66, both hemispheres 107.4
2068 Male, age 55, unknown 98.8
2809 Male, age 90, both hemispheres 98.8
2820 Female, age 79, both hemispheres 68.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

215.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 215.6
Samples: 204

Max nTPM: 365.8
Min nTPM: 98.6
Std nTPM: 47.0
Median nTPM: 216.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 365.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 342.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 336.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 335.1
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 331.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 308.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 306.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 299.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 296.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 292.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 290.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 287.5
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 287.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 284.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 281.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 281.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 279.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 279.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 277.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 275.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 275.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 275.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 274.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 270.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 269.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 269.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 266.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 265.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 262.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 261.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 259.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 257.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 256.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 256.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 256.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 255.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 255.5
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 254.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 254.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 252.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 249.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 248.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 248.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 248.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 248.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 247.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 246.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 246.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 245.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 244.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 244.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 243.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 243.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 242.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 240.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 240.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 239.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 238.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 238.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 238.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 238.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 237.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 237.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 236.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 236.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 235.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 234.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 234.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 234.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 233.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 232.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 232.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 230.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 230.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 229.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 229.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 228.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 228.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 227.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 227.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 226.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 226.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 226.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 225.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 225.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 225.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 224.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 224.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 223.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 223.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 223.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 222.9
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 222.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 222.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 221.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 221.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 219.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 219.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 219.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 218.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 218.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 216.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 216.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 215.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 215.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 215.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 214.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 214.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 213.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 212.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 211.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 210.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 210.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 210.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 210.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 210.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 210.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 210.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 209.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 209.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 208.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 208.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 207.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 206.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 205.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 205.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 204.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 204.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 203.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 203.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 203.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 202.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 201.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 201.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 201.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 199.5
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 198.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 198.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 196.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 195.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 195.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 194.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 193.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 193.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 192.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 190.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 190.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 188.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 187.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 187.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 186.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 186.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 185.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 185.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 183.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 183.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 177.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 177.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 176.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 176.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 176.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 174.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 174.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 173.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 171.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 170.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 169.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 168.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 168.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 168.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 167.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 165.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 164.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 164.3
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 163.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 162.3
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 160.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 159.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 159.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 159.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 158.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 156.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 156.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 153.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 153.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 153.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 153.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 147.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 146.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 145.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 145.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 144.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 143.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 142.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 142.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 138.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 128.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 126.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 124.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 117.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 117.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 112.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 109.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 98.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

301.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 301.5
FF:10181-103D1 60 years, female 360.3
FF:10159-103A6 76 years, female 242.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 140.5
Samples: 4

Max nTPM: 157.8
Min nTPM: 121.8
Sample A Female 121.8
Sample B Female 154.3
Sample C Male 157.8
Sample D Male 128.1
Ventral spinal cord
nTPM: 149.4
Samples: 4

Max nTPM: 160.3
Min nTPM: 139.0
Sample A Female 139.0
Sample B Female 160.3
Sample C Male 143.2
Sample D Male 155.0

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