MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:155.4 nTPM
HPA Brain:97.2 nTPM
GTEx:155.4 nTPM
FANTOM5:273.9 Scaled Tags Per Million
Pig:134.3 nTPM
Mouse:83.7 nTPM
Allen mouse:5.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 97.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.4
2411 Female, age 72, unknown 103.0
1870 Female, age 42, unknown 101.2
1833 Male, age 53, unknown 87.1
1830 Male, age 51, unknown 84.4
1827 Male, age 72, unknown 75.6
2019 Male, age 18, unknown 75.3
2828 Female, age 72, unknown 73.7
2219 Male, age 76, both hemispheres 62.7
2666 Male, age 74, left hemisphere 60.8
2586 Male, age 75, left hemisphere 60.5
Dorsal raphe nucleus
nTPM: 84.2
2750 Male, age 76, both hemispheres 96.4
2298 Female, age 72, unknown 93.0
1828 Male, age 53, unknown 81.4
2047 Male, age 72, unknown 77.5
2016 Female, age 72, unknown 72.8
Inferior colliculus
nTPM: 79.0
2097 Female, age 72, unknown 92.3
1848 Female, age 42, unknown 77.2
1890 Male, age 53, unknown 74.7
2849 Male, age 72, unknown 71.9
Median raphe nucleus
nTPM: 97.2
2220 Male, age 76, midline 97.2
Periaquaductal grey, anterior
nTPM: 81.8
1947 Male, age 18, unknown 92.2
2502 Female, age 75, unknown 87.1
1795 Male, age 51, unknown 66.2
Periaquaductal grey, dorsal
nTPM: 78.8
2850 Male, age 76, both hemispheres 92.1
2464 Female, age 72, unknown 80.7
1840 Male, age 53, unknown 72.7
1831 Male, age 72, unknown 69.9
Periaquaductal grey, lateral
nTPM: 73.7
2140 Male, age 76, both hemispheres 82.6
2053 Male, age 18, unknown 75.6
2272 Male, age 74, both hemispheres 62.9
Pretectal area
nTPM: 79.1
2224 Female, age 72, unknown 92.4
1815 Male, age 53, unknown 84.5
2667 Female, age 75, unknown 83.1
1817 Female, age 42, unknown 82.8
2316 Male, age 76, right hemisphere 80.2
2825 Male, age 18, unknown 78.5
1816 Male, age 51, unknown 78.0
1944 Female, age 72, unknown 77.6
2273 Male, age 74, both hemispheres 77.4
2007 Male, age 72, unknown 74.3
2407 Male, age 75, both hemispheres 61.5
Red nucleus
nTPM: 89.1
1821 Female, age 72, unknown 112.9
1865 Male, age 51, unknown 104.9
1904 Male, age 53, unknown 98.4
2503 Female, age 72, unknown 96.3
1954 Female, age 42, unknown 94.3
2227 Male, age 72, unknown 91.8
2823 Male, age 76, right hemisphere 88.9
2769 Male, age 72, unknown 87.4
2725 Female, age 75, unknown 85.3
2785 Male, age 18, unknown 78.3
2588 Male, age 74, left hemisphere 69.7
2584 Male, age 75, left hemisphere 61.5
Substantia nigra
nTPM: 89.9
2241 Male, age 72, unknown 126.5
2409 Female, age 72, unknown 118.2
1916 Female, age 42, unknown 93.8
1851 Male, age 51, unknown 92.5
1889 Female, age 72, unknown 91.1
2699 Male, age 18, unknown 87.6
2590 Female, age 75, unknown 77.9
1941 Male, age 53, unknown 77.5
2665 Male, age 74, both hemispheres 67.7
2583 Male, age 75, right hemisphere 66.6
Superior colliculus
nTPM: 76.1
2587 Male, age 74, left hemisphere 88.9
1913 Female, age 42, unknown 87.2
1895 Male, age 76, right hemisphere 78.8
2668 Female, age 75, unknown 77.8
1796 Male, age 53, unknown 76.5
1839 Male, age 51, unknown 75.9
2261 Male, age 18, unknown 74.7
2087 Female, age 72, unknown 74.2
1995 Male, age 72, unknown 72.8
2664 Male, age 75, both hemispheres 54.0
Ventral tegmental area
nTPM: 92.7
2223 Female, age 72, unknown 105.5
2410 Female, age 72, unknown 103.0
2021 Male, age 53, unknown 89.3
2218 Male, age 76, both hemispheres 88.1
1915 Female, age 42, unknown 87.6
1942 Male, age 51, unknown 82.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 155.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 155.4
Samples: 183

Max nTPM: 255.3
Min nTPM: 56.2
Std nTPM: 35.1
Median nTPM: 145.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 255.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 249.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 239.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 234.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 229.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 228.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 225.4
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 218.8
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 217.6
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 217.0
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 214.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 273.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 273.9
FF:10158-103A5 76 years, female 273.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 134.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 134.3
Samples: 4

Max nTPM: 171.7
Min nTPM: 104.0
Sample A Female 171.7
Sample B Female 127.5
Sample C Male 133.8
Sample D Male 104.0
Midbrain
nTPM: 122.9
Samples: 4

Max nTPM: 149.0
Min nTPM: 100.7
Sample A Female 149.0
Sample B Female 136.4
Sample C Male 100.7
Sample D Male 105.5
Periaqueductal gray
nTPM: 123.0
Samples: 3

Max nTPM: 129.6
Min nTPM: 118.5
Sample B Female 120.8
Sample C Male 129.6
Sample D Male 118.5
Superior colliculi
nTPM: 126.8
Samples: 4

Max nTPM: 147.7
Min nTPM: 116.4
Sample A Female 147.7
Sample B Female 116.4
Sample C Male 120.7
Sample D Male 122.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 83.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 83.7
Samples: 4

Max nTPM: 88.2
Min nTPM: 79.9
Sample A Male 88.2
Sample B Male 79.9
Sample C Female 85.8
Sample D Female 80.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
68269276 Antisense, RP_041208_02_A10, Mouse strain C57BL/6J (56 days, male) 5.2

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