MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:156.9 nTPM
HPA Brain:174.8 nTPM
GTEx:156.9 nTPM
FANTOM5:50.3 Scaled Tags Per Million
Pig:59.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 174.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 97.4
2666 Male, age 74, left hemisphere 183.3
1870 Female, age 42, unknown 118.4
2828 Female, age 72, unknown 112.9
1827 Male, age 72, unknown 110.3
1830 Male, age 51, unknown 98.0
2411 Female, age 72, unknown 92.4
1833 Male, age 53, unknown 80.8
2586 Male, age 75, left hemisphere 63.4
2019 Male, age 18, unknown 60.8
2219 Male, age 76, both hemispheres 53.1
Dorsal raphe nucleus
nTPM: 174.8
1828 Male, age 53, unknown 343.0
2047 Male, age 72, unknown 173.0
2298 Female, age 72, unknown 142.9
2016 Female, age 72, unknown 120.9
2750 Male, age 76, both hemispheres 94.3
Inferior colliculus
nTPM: 78.7
2097 Female, age 72, unknown 108.4
1848 Female, age 42, unknown 92.1
2849 Male, age 72, unknown 64.4
1890 Male, age 53, unknown 49.9
Median raphe nucleus
nTPM: 112.8
2220 Male, age 76, midline 112.8
Periaquaductal grey, anterior
nTPM: 152.9
2502 Female, age 75, unknown 186.1
1795 Male, age 51, unknown 152.3
1947 Male, age 18, unknown 120.2
Periaquaductal grey, dorsal
nTPM: 90.0
2850 Male, age 76, both hemispheres 114.7
2464 Female, age 72, unknown 98.7
1831 Male, age 72, unknown 84.6
1840 Male, age 53, unknown 62.0
Periaquaductal grey, lateral
nTPM: 137.7
2272 Male, age 74, both hemispheres 176.7
2140 Male, age 76, both hemispheres 122.0
2053 Male, age 18, unknown 114.3
Pretectal area
nTPM: 89.4
2825 Male, age 18, unknown 136.2
2224 Female, age 72, unknown 120.6
1817 Female, age 42, unknown 96.9
2316 Male, age 76, right hemisphere 93.3
2273 Male, age 74, both hemispheres 91.8
2667 Female, age 75, unknown 88.1
2007 Male, age 72, unknown 87.2
1816 Male, age 51, unknown 78.7
1944 Female, age 72, unknown 64.2
1815 Male, age 53, unknown 63.8
2407 Male, age 75, both hemispheres 63.0
Red nucleus
nTPM: 82.3
1954 Female, age 42, unknown 104.7
2227 Male, age 72, unknown 95.7
2503 Female, age 72, unknown 95.4
2769 Male, age 72, unknown 91.9
2725 Female, age 75, unknown 84.3
2584 Male, age 75, left hemisphere 81.0
1821 Female, age 72, unknown 77.8
1865 Male, age 51, unknown 77.1
2588 Male, age 74, left hemisphere 76.8
2823 Male, age 76, right hemisphere 72.3
2785 Male, age 18, unknown 66.3
1904 Male, age 53, unknown 64.0
Substantia nigra
nTPM: 89.1
2409 Female, age 72, unknown 129.3
2699 Male, age 18, unknown 119.8
1851 Male, age 51, unknown 96.1
1889 Female, age 72, unknown 93.0
1916 Female, age 42, unknown 86.4
2241 Male, age 72, unknown 82.4
2665 Male, age 74, both hemispheres 80.2
2590 Female, age 75, unknown 79.0
1941 Male, age 53, unknown 63.1
2583 Male, age 75, right hemisphere 61.8
Superior colliculus
nTPM: 103.3
1796 Male, age 53, unknown 285.5
2261 Male, age 18, unknown 116.8
1839 Male, age 51, unknown 94.6
2587 Male, age 74, left hemisphere 89.9
1895 Male, age 76, right hemisphere 84.4
1913 Female, age 42, unknown 82.8
2668 Female, age 75, unknown 78.3
2087 Female, age 72, unknown 70.7
1995 Male, age 72, unknown 67.1
2664 Male, age 75, both hemispheres 62.6
Ventral tegmental area
nTPM: 112.8
2410 Female, age 72, unknown 168.0
1915 Female, age 42, unknown 125.1
1942 Male, age 51, unknown 104.6
2218 Male, age 76, both hemispheres 101.0
2021 Male, age 53, unknown 92.7
2223 Female, age 72, unknown 85.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 156.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 156.9
Samples: 183

Max nTPM: 3089.1
Min nTPM: 39.9
Std nTPM: 242.4
Median nTPM: 117.4
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 3089.1
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 1049.7
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 658.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 633.5
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 587.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 474.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 339.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 276.3
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 245.1
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 235.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 231.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 50.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.3
FF:10158-103A5 76 years, female 50.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 59.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.6
Samples: 4

Max nTPM: 76.3
Min nTPM: 32.6
Sample A Female 76.3
Sample B Female 69.7
Sample C Male 32.6
Sample D Male 55.7
Midbrain
nTPM: 44.5
Samples: 4

Max nTPM: 81.1
Min nTPM: 27.5
Sample A Female 81.1
Sample B Female 28.1
Sample C Male 27.5
Sample D Male 41.4
Periaqueductal gray
nTPM: 36.4
Samples: 3

Max nTPM: 46.6
Min nTPM: 28.5
Sample B Female 28.5
Sample C Male 34.2
Sample D Male 46.6
Superior colliculi
nTPM: 59.6
Samples: 4

Max nTPM: 96.0
Min nTPM: 26.2
Sample A Female 96.0
Sample B Female 70.5
Sample C Male 26.2
Sample D Male 45.8

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