MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.9 nTPM
HPA Brain:107.2 nTPM
GTEx:32.9 nTPM
FANTOM5:145.3 Scaled Tags Per Million
Pig:60.7 nTPM
Mouse:10.4 nTPM
Allen mouse:6.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 107.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.4
2411 Female, age 72, unknown 110.8
1830 Male, age 51, unknown 106.6
1833 Male, age 53, unknown 101.6
2019 Male, age 18, unknown 98.7
1870 Female, age 42, unknown 88.1
2828 Female, age 72, unknown 86.2
2586 Male, age 75, left hemisphere 70.8
1827 Male, age 72, unknown 68.3
2666 Male, age 74, left hemisphere 62.7
2219 Male, age 76, both hemispheres 60.3
Dorsal raphe nucleus
nTPM: 64.2
2750 Male, age 76, both hemispheres 93.7
2016 Female, age 72, unknown 74.5
1828 Male, age 53, unknown 61.1
2298 Female, age 72, unknown 47.4
2047 Male, age 72, unknown 44.4
Inferior colliculus
nTPM: 56.8
2849 Male, age 72, unknown 62.1
1848 Female, age 42, unknown 60.9
1890 Male, age 53, unknown 57.0
2097 Female, age 72, unknown 47.2
Median raphe nucleus
nTPM: 47.0
2220 Male, age 76, midline 47.0
Periaquaductal grey, anterior
nTPM: 56.3
2502 Female, age 75, unknown 60.7
1947 Male, age 18, unknown 56.8
1795 Male, age 51, unknown 51.3
Periaquaductal grey, dorsal
nTPM: 50.7
2464 Female, age 72, unknown 75.2
1831 Male, age 72, unknown 49.5
2850 Male, age 76, both hemispheres 40.4
1840 Male, age 53, unknown 37.7
Periaquaductal grey, lateral
nTPM: 63.0
2272 Male, age 74, both hemispheres 72.4
2053 Male, age 18, unknown 60.1
2140 Male, age 76, both hemispheres 56.4
Pretectal area
nTPM: 65.3
2316 Male, age 76, right hemisphere 103.1
1815 Male, age 53, unknown 79.5
2407 Male, age 75, both hemispheres 78.7
2667 Female, age 75, unknown 68.6
1817 Female, age 42, unknown 64.8
2273 Male, age 74, both hemispheres 63.2
2007 Male, age 72, unknown 60.8
2825 Male, age 18, unknown 59.5
2224 Female, age 72, unknown 58.1
1944 Female, age 72, unknown 45.3
1816 Male, age 51, unknown 37.1
Red nucleus
nTPM: 107.2
1865 Male, age 51, unknown 128.8
2785 Male, age 18, unknown 128.0
2823 Male, age 76, right hemisphere 119.9
1904 Male, age 53, unknown 118.1
2769 Male, age 72, unknown 114.7
2227 Male, age 72, unknown 113.5
2503 Female, age 72, unknown 112.6
1821 Female, age 72, unknown 101.4
2588 Male, age 74, left hemisphere 98.5
1954 Female, age 42, unknown 88.4
2725 Female, age 75, unknown 84.1
2584 Male, age 75, left hemisphere 77.9
Substantia nigra
nTPM: 65.8
2409 Female, age 72, unknown 94.0
2583 Male, age 75, right hemisphere 80.9
1851 Male, age 51, unknown 73.5
2590 Female, age 75, unknown 73.1
2699 Male, age 18, unknown 72.8
1889 Female, age 72, unknown 62.7
1941 Male, age 53, unknown 58.0
2241 Male, age 72, unknown 55.8
2665 Male, age 74, both hemispheres 46.5
1916 Female, age 42, unknown 40.2
Superior colliculus
nTPM: 80.1
1913 Female, age 42, unknown 124.8
1995 Male, age 72, unknown 119.6
1895 Male, age 76, right hemisphere 100.2
1839 Male, age 51, unknown 79.2
2668 Female, age 75, unknown 71.9
2587 Male, age 74, left hemisphere 70.7
1796 Male, age 53, unknown 69.6
2087 Female, age 72, unknown 57.1
2664 Male, age 75, both hemispheres 57.0
2261 Male, age 18, unknown 51.3
Ventral tegmental area
nTPM: 66.9
2410 Female, age 72, unknown 94.6
2223 Female, age 72, unknown 70.8
1942 Male, age 51, unknown 66.0
2021 Male, age 53, unknown 60.5
2218 Male, age 76, both hemispheres 57.9
1915 Female, age 42, unknown 51.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 32.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.9
Samples: 183

Max nTPM: 102.9
Min nTPM: 7.2
Std nTPM: 16.1
Median nTPM: 28.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 102.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 82.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 79.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 77.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 74.7
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 73.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 73.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 69.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 67.2
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 67.1
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 65.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 145.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 145.3
FF:10158-103A5 76 years, female 145.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 60.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 60.7
Samples: 4

Max nTPM: 100.3
Min nTPM: 44.7
Sample A Female 44.7
Sample B Female 45.5
Sample C Male 52.1
Sample D Male 100.3
Midbrain
nTPM: 48.4
Samples: 4

Max nTPM: 61.4
Min nTPM: 34.1
Sample A Female 61.4
Sample B Female 55.3
Sample C Male 34.1
Sample D Male 42.6
Periaqueductal gray
nTPM: 41.5
Samples: 3

Max nTPM: 49.3
Min nTPM: 31.3
Sample B Female 49.3
Sample C Male 31.3
Sample D Male 44.0
Superior colliculi
nTPM: 45.2
Samples: 4

Max nTPM: 58.3
Min nTPM: 31.6
Sample A Female 42.1
Sample B Female 31.6
Sample C Male 48.9
Sample D Male 58.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 10.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.4
Samples: 4

Max nTPM: 12.0
Min nTPM: 8.9
Sample A Male 10.7
Sample B Male 8.9
Sample C Female 12.0
Sample D Female 10.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
69173232 Antisense, RP_050329_01_B12, Mouse strain C57BL/6J (56 days, male) 6.5

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