MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.7 nTPM
HPA Brain:36.5 nTPM
GTEx:14.7 nTPM
FANTOM5:20.3 Scaled Tags Per Million
Pig:41.5 nTPM
Mouse:58.3 nTPM
Allen mouse:1.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 36.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.5
2019 Male, age 18, unknown 37.3
2411 Female, age 72, unknown 36.4
1833 Male, age 53, unknown 33.3
1827 Male, age 72, unknown 33.0
1870 Female, age 42, unknown 32.4
2219 Male, age 76, both hemispheres 32.1
1830 Male, age 51, unknown 31.5
2828 Female, age 72, unknown 27.7
2666 Male, age 74, left hemisphere 27.4
2586 Male, age 75, left hemisphere 24.1
Dorsal raphe nucleus
nTPM: 30.8
2298 Female, age 72, unknown 33.7
2750 Male, age 76, both hemispheres 33.5
1828 Male, age 53, unknown 30.2
2047 Male, age 72, unknown 29.2
2016 Female, age 72, unknown 27.4
Inferior colliculus
nTPM: 35.7
2097 Female, age 72, unknown 40.6
1848 Female, age 42, unknown 35.0
1890 Male, age 53, unknown 34.7
2849 Male, age 72, unknown 32.4
Median raphe nucleus
nTPM: 28.0
2220 Male, age 76, midline 28.0
Periaquaductal grey, anterior
nTPM: 31.7
2502 Female, age 75, unknown 35.5
1947 Male, age 18, unknown 31.6
1795 Male, age 51, unknown 28.0
Periaquaductal grey, dorsal
nTPM: 31.1
2464 Female, age 72, unknown 34.3
1831 Male, age 72, unknown 32.7
2850 Male, age 76, both hemispheres 28.7
1840 Male, age 53, unknown 28.6
Periaquaductal grey, lateral
nTPM: 31.1
2272 Male, age 74, both hemispheres 35.4
2053 Male, age 18, unknown 31.2
2140 Male, age 76, both hemispheres 26.9
Pretectal area
nTPM: 36.5
1944 Female, age 72, unknown 46.1
1817 Female, age 42, unknown 44.6
1816 Male, age 51, unknown 44.0
2007 Male, age 72, unknown 42.0
1815 Male, age 53, unknown 37.9
2273 Male, age 74, both hemispheres 36.2
2224 Female, age 72, unknown 32.6
2667 Female, age 75, unknown 31.0
2407 Male, age 75, both hemispheres 30.7
2316 Male, age 76, right hemisphere 29.6
2825 Male, age 18, unknown 27.3
Red nucleus
nTPM: 33.1
2785 Male, age 18, unknown 37.6
1821 Female, age 72, unknown 36.3
1865 Male, age 51, unknown 36.3
1904 Male, age 53, unknown 36.3
2725 Female, age 75, unknown 34.7
1954 Female, age 42, unknown 34.4
2823 Male, age 76, right hemisphere 33.0
2503 Female, age 72, unknown 32.3
2227 Male, age 72, unknown 31.7
2769 Male, age 72, unknown 30.7
2588 Male, age 74, left hemisphere 26.7
2584 Male, age 75, left hemisphere 26.6
Substantia nigra
nTPM: 32.2
1889 Female, age 72, unknown 40.4
1941 Male, age 53, unknown 36.7
1916 Female, age 42, unknown 34.7
2590 Female, age 75, unknown 34.3
2241 Male, age 72, unknown 33.6
1851 Male, age 51, unknown 31.1
2409 Female, age 72, unknown 30.2
2665 Male, age 74, both hemispheres 29.3
2699 Male, age 18, unknown 26.1
2583 Male, age 75, right hemisphere 25.4
Superior colliculus
nTPM: 34.0
2261 Male, age 18, unknown 39.5
2087 Female, age 72, unknown 38.6
1895 Male, age 76, right hemisphere 37.8
2587 Male, age 74, left hemisphere 37.0
1913 Female, age 42, unknown 33.7
1796 Male, age 53, unknown 31.6
1995 Male, age 72, unknown 31.6
1839 Male, age 51, unknown 31.2
2668 Female, age 75, unknown 30.7
2664 Male, age 75, both hemispheres 28.5
Ventral tegmental area
nTPM: 32.3
2410 Female, age 72, unknown 40.0
2223 Female, age 72, unknown 34.3
2218 Male, age 76, both hemispheres 33.8
1942 Male, age 51, unknown 29.4
1915 Female, age 42, unknown 29.0
2021 Male, age 53, unknown 27.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.7
Samples: 183

Max nTPM: 24.9
Min nTPM: 6.7
Std nTPM: 3.3
Median nTPM: 14.5
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 24.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 24.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 23.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 22.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 22.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 22.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 22.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 21.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 21.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 21.0
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 20.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.3
FF:10158-103A5 76 years, female 20.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 41.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.6
Samples: 4

Max nTPM: 42.1
Min nTPM: 29.8
Sample A Female 42.1
Sample B Female 29.8
Sample C Male 34.2
Sample D Male 32.1
Midbrain
nTPM: 41.6
Samples: 4

Max nTPM: 50.0
Min nTPM: 31.6
Sample A Female 42.0
Sample B Female 31.6
Sample C Male 50.0
Sample D Male 42.6
Periaqueductal gray
nTPM: 29.7
Samples: 3

Max nTPM: 31.3
Min nTPM: 28.0
Sample B Female 29.7
Sample C Male 31.3
Sample D Male 28.0
Superior colliculi
nTPM: 40.6
Samples: 4

Max nTPM: 48.8
Min nTPM: 30.3
Sample A Female 43.9
Sample B Female 30.3
Sample C Male 48.8
Sample D Male 39.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 58.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 58.4
Samples: 4

Max nTPM: 61.1
Min nTPM: 53.0
Sample A Male 53.0
Sample B Male 58.7
Sample C Female 61.1
Sample D Female 60.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
69262257 Antisense, RP_050301_02_A05, Mouse strain C57BL/6J (56 days, male) 1.7

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