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NUP214
HPA
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ipTM
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • NUP214
INTERACTION INTERACTION METABOLIC PATHWAYS Show tissue menu
TRANSPORT REACTIONS
Protein interactions
Protein interactions
Methods
Human metabolism
Metabolic proteins
Methods
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

NUP214
Synonyms CAIN, CAN, D9S46E, N214
Gene descriptioni

Full gene name according to HGNC.

Nucleoporin 214
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Cancer-related genes
Disease related genes
Essential proteins
Human disease related genes
Metabolic proteins
Plasma proteins
Potential drug targets
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)

HUMAN PROTEIN ATLAS INFORMATIONi

Summary of RNA expression analysis and annotation data generated within the Human Protein Atlas project.

Single cell type
expression clusteri

The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Monocytes & Neutrophils - Inflammatory signaling (mainly)
Single cell type specificityi

The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected.

Cell type enhanced (Early spermatids, Late spermatids, Neutrophils)
Tissue expression
cluster (RNA)i

The RNA data was used to cluster genes according to their expression across tissues. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Testis - Mixed function (mainly)
Tissue specificity (RNA)i

The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected.

Tissue enhanced (Testis)
Subcellular locationi

Main subcellular location based on data generated in the subcellular section of the Human Protein Atlas.

Not available
Secretome annotationi

All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:

  • secreted into blood
  • locally secreted
  • or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.
Not available
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 9
Cytoband q34.13
Chromosome location (bp) 131125573 - 131234663
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

13
Ensembl ENSG00000126883 (version 109)
Entrez gene 8021
HGNC HGNC:8064
UniProt P35658
GeneCards NUP214
ASSAYSi

Links to data of the different assays available in the Structure & Interaction resource of the Human Protein Atlas. Click on the miniature images to directly get to the respective section.

Interaction Metabolic
INTERACTIONi

In the Interaction part of this page network plots showing the gene's first-level interaction partners according to four different datasets are displayed, including a consensus network plot showing only interactions present in at least two of the datasets. By clicking on nodes the network can be expanded. In the network plots the nodes represent genes and edge color represent the number of datasets the interaction belongs to. In-house generated AlphaFold 3 predicted 3D structures for interactions in the consensus network are displayed by clicking on the blue symbols on the edges.

The highlight bar in the top of the plot can be used to color the nodes according to subcellular location (based on data in the Subcellular section), predicted location (based on signalpeptide and transmembrane region predictions), tissue specificity (based on RNA tissue expression profiles) or proteinclass. For genes categorised as single cell type or group specific the option to highlight interaction partners expressed in the same cell type will also be available in the highlight bar.

Custom highlighting of nodes is possible using the top left Filter option in which a query of choice can be built to for example label all nodes that are tissue enriched in both human and mouse brain or those that belongs to a certain tissue expression cluster. The expression cluster for the gene is stated in the box Human Protein Atlas Information above the network plot. Click on Filter in the top left in the plot to find the query builder and some example queries.

Interactions included are direct interaction and physical associations with high and medium confidence from IntAct, physical multivalidated interactions from BioGRID, interactions with>75% probability from BioPlex and significant physical interactions from OpenCell.

Filter menu »
Fields »
e.g. Brain enriched, Localized to mitochondria, Testis - Mixed function

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


Consensus
IntAct
BioGrid
OpenCell
BioPlex
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Non-commercial use only, subject to AlphaFold3 Output Terms of Use

Interaction:
Color scheme:
Confidence
Antibodies
Interactor
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PAE plot
Number of interactions: 9
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
NUP18830732
NUP62206140818
NUP883314103
NUP936626120
NUP988236100
NXF118629730
RAE16532102
RAN3288756611
XPO12571292910
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 2 View all protein interaction data in IntAct
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
NUP883314103
NXF118629730
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 30
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
CCNF4462401
CUL3404577120
G3BP13515146691
G3BP2374681650
GLE1041816
HDAC410225520
IPO519751370
KPNB136141057111
NUP107833394
NUP15313350201
NUP155234650
NUP18830732
NUP35223056
NUP58377740
NUP62206140818
NUP85791707
NUP883314103
NUP936626120
NUP988236100
NXF118629730
NXF201300
PRKN1111140500
RAE16532102
RAN3288756611
RANBP27755195
SMAD217236900
SMAD3285212802
SMAD4227471016
XPO12571292910
ZFP36262300
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 9
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
NUP18830732
NUP62206140818
NUP883314103
NUP936626120
NUP988236100
OGT101479165
RAE16532102
RAN3288756611
XPO12571292910
NUP214 has no defined protein interactions in BioPlex.
METABOLIC SUMMARYi

In this summary the pathway/subsystems to which the gene belongs is shown together with the associated cellular compartment for the reactions based on metabolite information. The number of proteins and metabolites in the pathway is shown as well as the number of reactions for the selected gene. By clicking on a pathway in the summary table the associated metabolic network map is shown, together with a gene-tissue heatmap that shows the expression of genes in that pathway in different tissues.

Gene NUP214 is associated with 2 reactions in 1 different subsystems, and present in the compartments: Cytosol, Nucleus. Provided by metabolicatlas.org
Pathway / Subsystem Subsystem-associated compartments # proteins # metabolites # reactions for
this protein
Transport reactions Cytosol, Extracellular, Lysosome, Peroxisome, Mitochondria, Golgi apparatus, Endoplasmic reticulum, Nucleus, Inner mitochondria 563 1599 2
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.

Splice variant SwissProt TrEMBL Protein class Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
NUP214-201 P35658
Metabolic proteins
Transporters
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
Disease related genes
Potential drug targets
Human disease related genes
Mapped to neXtProt
Essential proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
2090 aa
213.6 kDa
No 0
NUP214-202 P35658
Metabolic proteins
Transporters
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
Disease related genes
Potential drug targets
Human disease related genes
Mapped to neXtProt
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
2080 aa
212.6 kDa
No 0
NUP214-206 H0YDH2
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Human disease related genes
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
145 aa
14.4 kDa
No 0
NUP214-207 B7ZAV2
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Human disease related genes
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
916 aa
88 kDa
No 0
NUP214-210 H0YED3
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Human disease related genes
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
113 aa
12.1 kDa
Yes 0
NUP214-218 H0YDI2
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Human disease related genes
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
78 aa
7.4 kDa
No 0
NUP214-223 H0YDS4
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Human disease related genes
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
187 aa
19.6 kDa
No 0
NUP214-224 E9PS86
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Human disease related genes
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
52 aa
6 kDa
No 0
NUP214-225 E9PKD2
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Human disease related genes
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
495 aa
48 kDa
No 0
NUP214-228 A0A494BZU9
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Human disease related genes
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
720 aa
78.2 kDa
No 0
NUP214-229 A0A494C104
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Human disease related genes
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
203 aa
19.9 kDa
No 0
NUP214-230 A0A494C0J0
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Human disease related genes
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
187 aa
20.4 kDa
No 0
NUP214-231 A0A494C1F2
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Human disease related genes
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
2078 aa
212.5 kDa
No 0
Show allShow less

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