A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
470.9
nTPM
Monaco:
1535.6
nTPM
Schmiedel:
105.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
470.9
HPA sample
nTPM
NK-cell nTPM: 470.8
Samples: 6
Max nTPM: 580.1
Min nTPM: 416.9
P10809_1013
416.9
P10809_1033
434.7
P10809_1052
440.9
P10809_1071
580.1
P10809_1093
511.4
P10809_1103
441.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1535.6
Monaco sample
nTPM
NK-cell nTPM: 1535.6
Samples: 4
Max nTPM: 1847.6
Min nTPM: 1358.1
RHH5316_R3683
1358.1
RHH5224_R3596
1847.6
RHH5253_R3625
1492.1
RHH5282_R3654
1444.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
105.6
Schmiedel sample id
TPM
NK-cell TPM: 105.6
Samples: 90
Max TPM: 206.6
Min TPM: 60.1
NK_1
206.6
NK_2
196.5
NK_3
181.2
NK_4
169.6
NK_5
158.9
NK_6
155.5
NK_7
154.2
NK_8
152.2
NK_9
146.8
NK_10
144.3
NK_11
143.2
NK_12
140.0
NK_13
137.8
NK_14
132.1
NK_15
127.5
NK_16
126.0
NK_17
125.7
NK_18
125.5
NK_19
125.4
NK_20
123.6
NK_21
121.6
NK_22
121.3
NK_23
120.4
NK_24
120.1
NK_25
119.1
NK_26
118.6
NK_27
117.0
NK_28
116.6
NK_29
116.1
NK_30
114.5
NK_31
114.2
NK_32
113.7
NK_33
113.6
NK_34
112.6
NK_35
112.2
NK_36
111.0
NK_37
110.9
NK_38
110.5
NK_39
107.2
NK_40
106.8
NK_41
105.4
NK_42
105.3
NK_43
104.8
NK_44
103.5
NK_45
102.6
NK_46
101.7
NK_47
100.0
NK_48
99.1
NK_49
98.9
NK_50
96.8
NK_51
96.3
NK_52
95.7
NK_53
93.5
NK_54
93.3
NK_55
90.7
NK_56
89.7
NK_57
89.3
NK_58
88.5
NK_59
88.1
NK_60
88.1
NK_61
88.1
NK_62
87.7
NK_63
87.0
NK_64
86.2
NK_65
86.1
NK_66
85.9
NK_67
84.8
NK_68
83.6
NK_69
83.3
NK_70
81.2
NK_71
80.5
NK_72
79.6
NK_73
79.1
NK_74
78.9
NK_75
78.7
NK_76
78.2
NK_77
77.7
NK_78
77.4
NK_79
75.7
NK_80
75.5
NK_81
73.6
NK_82
73.0
NK_83
71.0
NK_84
68.5
NK_85
66.3
NK_86
65.4
NK_87
65.3
NK_88
63.3
NK_89
60.1
NK_90
60.1
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