A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
466.8
nTPM
Monaco:
1590.7
nTPM
Schmiedel:
135.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
466.8
HPA sample
nTPM
Classical monocyte nTPM: 216.0
Samples: 6
Max nTPM: 269.8
Min nTPM: 158.5
P10809_1003
269.8
P10809_1020
237.6
P10809_1039
235.7
P10809_1058
186.9
P10809_1080
207.3
P10809_1107
158.5
Intermediate monocyte nTPM: 407.9
Samples: 6
Max nTPM: 515.4
Min nTPM: 338.4
P10809_1004
392.3
P10809_1023
473.7
P10809_1042
515.4
P10809_1061
388.1
P10809_1081
338.4
P10809_1108
339.5
Non-classical monocyte nTPM: 466.8
Samples: 5
Max nTPM: 538.2
Min nTPM: 386.6
P10809_1005
453.8
P10809_1053
538.2
P10809_1072
480.0
P10809_1082
386.6
P10809_1109
475.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1590.7
Monaco sample
nTPM
Classical monocyte nTPM: 767.7
Samples: 4
Max nTPM: 916.9
Min nTPM: 704.6
RHH5313_R3680
722.8
RHH5221_R3593
916.9
RHH5250_R3622
726.3
RHH5279_R3651
704.6
Intermediate monocyte nTPM: 1379.5
Samples: 4
Max nTPM: 1610.0
Min nTPM: 1267.1
RHH5314_R3681
1267.1
RHH5222_R3594
1269.4
RHH5251_R3623
1371.5
RHH5280_R3652
1610.0
Non-classical monocyte nTPM: 1590.7
Samples: 4
Max nTPM: 1735.7
Min nTPM: 1439.0
RHH5315_R3682
1439.0
RHH5223_R3595
1636.6
RHH5252_R3624
1551.5
RHH5281_R3653
1735.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
135.0
Schmiedel sample id
TPM
Classical monocyte TPM: 43.0
Samples: 91
Max TPM: 64.8
Min TPM: 26.4
MONOCYTES_1
64.8
MONOCYTES_2
63.1
MONOCYTES_3
62.0
MONOCYTES_4
60.1
MONOCYTES_5
55.7
MONOCYTES_6
54.6
MONOCYTES_7
53.3
MONOCYTES_8
51.3
MONOCYTES_9
51.3
MONOCYTES_10
50.4
MONOCYTES_11
50.1
MONOCYTES_12
49.8
MONOCYTES_13
49.7
MONOCYTES_14
49.4
MONOCYTES_15
49.0
MONOCYTES_16
49.0
MONOCYTES_17
48.7
MONOCYTES_18
48.5
MONOCYTES_19
48.0
MONOCYTES_20
47.8
MONOCYTES_21
47.6
MONOCYTES_22
47.5
MONOCYTES_23
47.4
MONOCYTES_24
47.2
MONOCYTES_25
47.1
MONOCYTES_26
46.7
MONOCYTES_27
46.5
MONOCYTES_28
46.3
MONOCYTES_29
46.1
MONOCYTES_30
45.8
MONOCYTES_31
45.7
MONOCYTES_32
45.2
MONOCYTES_33
45.1
MONOCYTES_34
45.1
MONOCYTES_35
45.1
MONOCYTES_36
44.9
MONOCYTES_37
44.6
MONOCYTES_38
44.4
MONOCYTES_39
44.1
MONOCYTES_40
43.9
MONOCYTES_41
43.7
MONOCYTES_42
43.0
MONOCYTES_43
42.8
MONOCYTES_44
42.8
MONOCYTES_45
42.8
MONOCYTES_46
42.7
MONOCYTES_47
42.6
MONOCYTES_48
42.6
MONOCYTES_49
42.4
MONOCYTES_50
42.1
MONOCYTES_51
41.7
MONOCYTES_52
41.6
MONOCYTES_53
41.2
MONOCYTES_54
41.1
MONOCYTES_55
40.6
MONOCYTES_56
40.1
MONOCYTES_57
39.9
MONOCYTES_58
39.8
MONOCYTES_59
39.7
MONOCYTES_60
39.6
MONOCYTES_61
39.5
MONOCYTES_62
39.4
MONOCYTES_63
39.2
MONOCYTES_64
38.9
MONOCYTES_65
38.8
MONOCYTES_66
38.8
MONOCYTES_67
38.3
MONOCYTES_68
38.1
MONOCYTES_69
38.1
MONOCYTES_70
38.1
MONOCYTES_71
38.0
MONOCYTES_72
37.7
MONOCYTES_73
37.3
MONOCYTES_74
37.3
MONOCYTES_75
37.3
MONOCYTES_76
37.2
MONOCYTES_77
37.2
MONOCYTES_78
37.0
MONOCYTES_79
36.7
MONOCYTES_80
35.7
MONOCYTES_81
35.0
MONOCYTES_82
35.0
MONOCYTES_83
34.7
MONOCYTES_84
34.2
MONOCYTES_85
33.4
MONOCYTES_86
32.8
MONOCYTES_87
32.6
MONOCYTES_88
32.0
MONOCYTES_89
28.1
MONOCYTES_90
26.6
MONOCYTES_91
26.4
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Non-classical monocyte TPM: 135.0
Samples: 90
Max TPM: 191.4
Min TPM: 62.8
M2_1
191.4
M2_2
189.8
M2_3
188.2
M2_4
185.4
M2_5
173.9
M2_6
173.1
M2_7
168.3
M2_8
167.3
M2_9
165.1
M2_10
164.6
M2_11
163.8
M2_12
163.7
M2_13
162.0
M2_14
159.0
M2_15
158.2
M2_16
155.9
M2_17
154.7
M2_18
154.5
M2_19
153.9
M2_20
153.8
M2_21
153.6
M2_22
150.2
M2_23
147.9
M2_24
146.4
M2_25
145.8
M2_26
145.7
M2_27
145.6
M2_28
145.5
M2_29
144.5
M2_30
143.6
M2_31
142.3
M2_32
141.0
M2_33
138.1
M2_34
136.7
M2_35
136.3
M2_36
134.7
M2_37
134.0
M2_38
133.5
M2_39
133.5
M2_40
133.1
M2_41
132.1
M2_42
131.9
M2_43
131.9
M2_44
131.4
M2_45
130.4
M2_46
129.7
M2_47
129.5
M2_48
128.9
M2_49
128.3
M2_50
128.1
M2_51
127.8
M2_52
127.5
M2_53
127.3
M2_54
126.9
M2_55
126.8
M2_56
126.8
M2_57
124.6
M2_58
124.5
M2_59
124.3
M2_60
123.5
M2_61
123.1
M2_62
123.1
M2_63
122.7
M2_64
121.4
M2_65
121.3
M2_66
120.6
M2_67
120.0
M2_68
119.7
M2_69
119.7
M2_70
117.5
M2_71
117.4
M2_72
116.7
M2_73
116.6
M2_74
115.8
M2_75
115.0
M2_76
114.6
M2_77
114.6
M2_78
114.3
M2_79
114.3
M2_80
114.2
M2_81
112.8
M2_82
112.5
M2_83
112.1
M2_84
111.7
M2_85
109.4
M2_86
108.6
M2_87
108.1
M2_88
103.9
M2_89
100.8
M2_90
62.8
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