MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:74.8 nTPM
HPA Brain:188.1 nTPM
GTEx:74.8 nTPM
FANTOM5:6.1 Scaled Tags Per Million
Pig:60.7 nTPM
Mouse:44.8 nTPM
Allen mouse:11.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 188.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 116.6
2666 Male, age 74, left hemisphere 164.0
2828 Female, age 72, unknown 152.5
1827 Male, age 72, unknown 148.7
2219 Male, age 76, both hemispheres 145.2
2586 Male, age 75, left hemisphere 131.8
2411 Female, age 72, unknown 115.9
1870 Female, age 42, unknown 89.9
2019 Male, age 18, unknown 78.4
1833 Male, age 53, unknown 73.6
1830 Male, age 51, unknown 65.9
Dorsal raphe nucleus
nTPM: 123.3
2298 Female, age 72, unknown 167.0
2750 Male, age 76, both hemispheres 146.9
2047 Male, age 72, unknown 135.3
1828 Male, age 53, unknown 94.6
2016 Female, age 72, unknown 72.8
Inferior colliculus
nTPM: 69.8
2097 Female, age 72, unknown 88.6
1848 Female, age 42, unknown 68.9
1890 Male, age 53, unknown 62.7
2849 Male, age 72, unknown 58.9
Median raphe nucleus
nTPM: 188.1
2220 Male, age 76, midline 188.1
Periaquaductal grey, anterior
nTPM: 165.8
1795 Male, age 51, unknown 209.1
2502 Female, age 75, unknown 149.4
1947 Male, age 18, unknown 139.1
Periaquaductal grey, dorsal
nTPM: 85.2
1840 Male, age 53, unknown 96.3
1831 Male, age 72, unknown 86.7
2850 Male, age 76, both hemispheres 82.4
2464 Female, age 72, unknown 75.6
Periaquaductal grey, lateral
nTPM: 76.2
2053 Male, age 18, unknown 94.6
2140 Male, age 76, both hemispheres 77.3
2272 Male, age 74, both hemispheres 56.9
Pretectal area
nTPM: 136.6
1816 Male, age 51, unknown 226.3
1944 Female, age 72, unknown 185.5
2667 Female, age 75, unknown 178.1
2007 Male, age 72, unknown 176.6
1815 Male, age 53, unknown 166.3
1817 Female, age 42, unknown 164.2
2224 Female, age 72, unknown 119.9
2825 Male, age 18, unknown 102.0
2316 Male, age 76, right hemisphere 74.3
2407 Male, age 75, both hemispheres 60.1
2273 Male, age 74, both hemispheres 49.3
Red nucleus
nTPM: 55.4
2584 Male, age 75, left hemisphere 116.7
2785 Male, age 18, unknown 89.5
2588 Male, age 74, left hemisphere 56.0
1954 Female, age 42, unknown 55.2
1821 Female, age 72, unknown 53.2
2769 Male, age 72, unknown 50.5
2227 Male, age 72, unknown 49.4
1904 Male, age 53, unknown 47.0
2503 Female, age 72, unknown 44.8
2823 Male, age 76, right hemisphere 40.6
1865 Male, age 51, unknown 39.2
2725 Female, age 75, unknown 23.1
Substantia nigra
nTPM: 144.7
2665 Male, age 74, both hemispheres 240.6
1916 Female, age 42, unknown 212.9
1941 Male, age 53, unknown 161.7
1851 Male, age 51, unknown 160.2
1889 Female, age 72, unknown 158.8
2241 Male, age 72, unknown 127.6
2583 Male, age 75, right hemisphere 119.7
2409 Female, age 72, unknown 112.2
2699 Male, age 18, unknown 95.1
2590 Female, age 75, unknown 58.3
Superior colliculus
nTPM: 138.8
2668 Female, age 75, unknown 437.3
1796 Male, age 53, unknown 161.1
2087 Female, age 72, unknown 159.5
2261 Male, age 18, unknown 149.3
2664 Male, age 75, both hemispheres 104.3
1913 Female, age 42, unknown 84.2
1839 Male, age 51, unknown 83.8
1895 Male, age 76, right hemisphere 73.9
2587 Male, age 74, left hemisphere 67.6
1995 Male, age 72, unknown 66.8
Ventral tegmental area
nTPM: 133.5
2218 Male, age 76, both hemispheres 181.3
1915 Female, age 42, unknown 151.1
2410 Female, age 72, unknown 150.5
1942 Male, age 51, unknown 137.6
2021 Male, age 53, unknown 112.3
2223 Female, age 72, unknown 68.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 74.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.8
Samples: 183

Max nTPM: 273.5
Min nTPM: 1.3
Std nTPM: 67.5
Median nTPM: 57.1
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 273.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 268.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 249.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 249.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 246.7
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 241.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 234.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 229.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 229.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 208.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 207.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 6.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.1
FF:10158-103A5 76 years, female 6.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 60.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 60.7
Samples: 4

Max nTPM: 103.1
Min nTPM: 9.2
Sample A Female 89.3
Sample B Female 41.2
Sample C Male 103.1
Sample D Male 9.2
Midbrain
nTPM: 50.0
Samples: 4

Max nTPM: 117.0
Min nTPM: 4.6
Sample A Female 4.6
Sample B Female 31.8
Sample C Male 117.0
Sample D Male 46.4
Periaqueductal gray
nTPM: 28.1
Samples: 3

Max nTPM: 43.1
Min nTPM: 18.2
Sample B Female 22.9
Sample C Male 43.1
Sample D Male 18.2
Superior colliculi
nTPM: 36.9
Samples: 4

Max nTPM: 62.3
Min nTPM: 15.3
Sample A Female 33.1
Sample B Female 15.3
Sample C Male 62.3
Sample D Male 36.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 44.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.8
Samples: 4

Max nTPM: 65.3
Min nTPM: 29.4
Sample A Male 65.3
Sample B Male 43.9
Sample C Female 29.4
Sample D Female 40.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 11.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.9
1861 Antisense, RP_040526_02_E02, Mouse strain C57BL/6J (56 days, male) 11.9
1860 Antisense, RP_040526_02_E02, Mouse strain C57BL/6J (56 days, male) 4.4

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