MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:90.2 nTPM
HPA Brain:265.2 nTPM
GTEx:90.2 nTPM
FANTOM5:163.9 Scaled Tags Per Million
Pig:66.3 nTPM
Mouse:68.3 nTPM
Allen mouse:9.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 265.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 250.3
2586 Male, age 75, left hemisphere 308.5
2828 Female, age 72, unknown 270.8
2019 Male, age 18, unknown 263.1
2666 Male, age 74, left hemisphere 253.1
1833 Male, age 53, unknown 252.1
1830 Male, age 51, unknown 242.2
1827 Male, age 72, unknown 240.6
2411 Female, age 72, unknown 237.5
1870 Female, age 42, unknown 230.8
2219 Male, age 76, both hemispheres 204.4
Dorsal raphe nucleus
nTPM: 236.3
2750 Male, age 76, both hemispheres 269.8
2047 Male, age 72, unknown 252.3
1828 Male, age 53, unknown 241.4
2016 Female, age 72, unknown 234.5
2298 Female, age 72, unknown 183.6
Inferior colliculus
nTPM: 229.8
2849 Male, age 72, unknown 250.5
1848 Female, age 42, unknown 241.6
1890 Male, age 53, unknown 235.4
2097 Female, age 72, unknown 191.8
Median raphe nucleus
nTPM: 265.2
2220 Male, age 76, midline 265.2
Periaquaductal grey, anterior
nTPM: 209.0
1795 Male, age 51, unknown 219.1
1947 Male, age 18, unknown 218.6
2502 Female, age 75, unknown 189.3
Periaquaductal grey, dorsal
nTPM: 229.1
2850 Male, age 76, both hemispheres 250.2
2464 Female, age 72, unknown 243.2
1840 Male, age 53, unknown 213.2
1831 Male, age 72, unknown 209.9
Periaquaductal grey, lateral
nTPM: 229.0
2140 Male, age 76, both hemispheres 280.8
2053 Male, age 18, unknown 217.1
2272 Male, age 74, both hemispheres 188.9
Pretectal area
nTPM: 231.4
2316 Male, age 76, right hemisphere 263.6
2007 Male, age 72, unknown 252.7
1817 Female, age 42, unknown 251.0
1815 Male, age 53, unknown 246.8
2667 Female, age 75, unknown 233.0
1944 Female, age 72, unknown 232.0
1816 Male, age 51, unknown 226.1
2407 Male, age 75, both hemispheres 224.0
2825 Male, age 18, unknown 219.3
2224 Female, age 72, unknown 203.2
2273 Male, age 74, both hemispheres 193.6
Red nucleus
nTPM: 261.3
2588 Male, age 74, left hemisphere 320.7
2823 Male, age 76, right hemisphere 284.2
2503 Female, age 72, unknown 279.3
2725 Female, age 75, unknown 266.0
1865 Male, age 51, unknown 260.6
2785 Male, age 18, unknown 259.7
2769 Male, age 72, unknown 255.2
1954 Female, age 42, unknown 250.7
1904 Male, age 53, unknown 249.0
2227 Male, age 72, unknown 248.3
1821 Female, age 72, unknown 246.9
2584 Male, age 75, left hemisphere 215.3
Substantia nigra
nTPM: 248.7
1916 Female, age 42, unknown 279.2
2583 Male, age 75, right hemisphere 260.4
2699 Male, age 18, unknown 254.6
2241 Male, age 72, unknown 250.4
1851 Male, age 51, unknown 248.1
1941 Male, age 53, unknown 247.0
2409 Female, age 72, unknown 247.0
1889 Female, age 72, unknown 238.7
2590 Female, age 75, unknown 231.3
2665 Male, age 74, both hemispheres 230.7
Superior colliculus
nTPM: 225.4
2668 Female, age 75, unknown 257.6
1895 Male, age 76, right hemisphere 235.0
1796 Male, age 53, unknown 232.6
1839 Male, age 51, unknown 228.4
2087 Female, age 72, unknown 225.8
1913 Female, age 42, unknown 223.1
2664 Male, age 75, both hemispheres 218.5
2261 Male, age 18, unknown 217.1
2587 Male, age 74, left hemisphere 208.5
1995 Male, age 72, unknown 207.7
Ventral tegmental area
nTPM: 237.8
2218 Male, age 76, both hemispheres 258.1
2410 Female, age 72, unknown 244.8
1915 Female, age 42, unknown 236.0
1942 Male, age 51, unknown 233.3
2223 Female, age 72, unknown 229.4
2021 Male, age 53, unknown 225.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 90.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 90.2
Samples: 183

Max nTPM: 198.4
Min nTPM: 50.9
Std nTPM: 27.0
Median nTPM: 85.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 198.4
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 182.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 177.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 160.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 158.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 156.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 153.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 148.1
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 147.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 144.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 143.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 163.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 163.9
FF:10158-103A5 76 years, female 163.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 66.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 64.2
Samples: 4

Max nTPM: 74.3
Min nTPM: 54.5
Sample A Female 54.5
Sample B Female 61.5
Sample C Male 66.4
Sample D Male 74.3
Midbrain
nTPM: 66.4
Samples: 4

Max nTPM: 79.7
Min nTPM: 56.1
Sample A Female 72.3
Sample B Female 56.1
Sample C Male 79.7
Sample D Male 57.3
Periaqueductal gray
nTPM: 59.0
Samples: 3

Max nTPM: 62.3
Min nTPM: 56.8
Sample B Female 62.3
Sample C Male 58.0
Sample D Male 56.8
Superior colliculi
nTPM: 62.6
Samples: 4

Max nTPM: 76.9
Min nTPM: 50.7
Sample A Female 50.7
Sample B Female 57.7
Sample C Male 76.9
Sample D Male 65.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 68.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 68.3
Samples: 4

Max nTPM: 78.1
Min nTPM: 54.9
Sample A Male 54.9
Sample B Male 78.1
Sample C Female 65.3
Sample D Female 74.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.9
69736400 Antisense, RP_050503_04_G01, Mouse strain C57BL/6J (56 days, male) 9.9

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