A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
20.0
nTPM
Monaco:
107.5
nTPM
Schmiedel:
93.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.0
HPA sample
nTPM
NK-cell nTPM: 20.0
Samples: 6
Max nTPM: 24.9
Min nTPM: 10.5
P10809_1013
23.6
P10809_1033
24.1
P10809_1052
16.3
P10809_1071
20.8
P10809_1093
10.5
P10809_1103
24.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
107.5
Monaco sample
nTPM
NK-cell nTPM: 107.5
Samples: 4
Max nTPM: 141.3
Min nTPM: 85.4
RHH5316_R3683
85.4
RHH5224_R3596
141.3
RHH5253_R3625
109.3
RHH5282_R3654
94.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
93.4
Schmiedel sample id
TPM
NK-cell TPM: 93.4
Samples: 90
Max TPM: 139.3
Min TPM: 60.2
NK_1
139.3
NK_2
134.1
NK_3
131.1
NK_4
130.0
NK_5
119.3
NK_6
118.7
NK_7
116.0
NK_8
113.5
NK_9
112.0
NK_10
111.4
NK_11
110.4
NK_12
108.7
NK_13
107.9
NK_14
107.5
NK_15
106.0
NK_16
105.9
NK_17
105.7
NK_18
105.4
NK_19
104.9
NK_20
104.8
NK_21
104.6
NK_22
104.3
NK_23
102.6
NK_24
102.4
NK_25
102.3
NK_26
102.1
NK_27
100.6
NK_28
99.9
NK_29
99.0
NK_30
98.6
NK_31
98.3
NK_32
97.9
NK_33
96.4
NK_34
95.7
NK_35
95.7
NK_36
94.9
NK_37
94.5
NK_38
94.5
NK_39
94.5
NK_40
94.1
NK_41
93.8
NK_42
93.4
NK_43
93.2
NK_44
92.8
NK_45
92.3
NK_46
92.2
NK_47
92.1
NK_48
92.0
NK_49
91.6
NK_50
90.5
NK_51
89.5
NK_52
89.3
NK_53
89.2
NK_54
89.2
NK_55
89.1
NK_56
88.9
NK_57
86.8
NK_58
86.6
NK_59
86.5
NK_60
85.5
NK_61
84.8
NK_62
84.3
NK_63
84.0
NK_64
82.8
NK_65
82.7
NK_66
82.6
NK_67
82.3
NK_68
81.7
NK_69
81.7
NK_70
81.0
NK_71
81.0
NK_72
80.0
NK_73
79.4
NK_74
79.0
NK_75
78.0
NK_76
77.9
NK_77
77.8
NK_78
77.5
NK_79
77.5
NK_80
77.1
NK_81
75.8
NK_82
75.6
NK_83
75.1
NK_84
74.9
NK_85
74.7
NK_86
73.7
NK_87
72.0
NK_88
71.7
NK_89
66.1
NK_90
60.2
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