A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.5
nTPM
Monaco:
97.1
nTPM
Schmiedel:
57.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.5
HPA sample
nTPM
Classical monocyte nTPM: 14.5
Samples: 6
Max nTPM: 19.0
Min nTPM: 10.4
P10809_1003
19.0
P10809_1020
18.2
P10809_1039
12.7
P10809_1058
12.2
P10809_1080
14.4
P10809_1107
10.4
Intermediate monocyte nTPM: 18.4
Samples: 6
Max nTPM: 35.9
Min nTPM: 12.6
P10809_1004
15.4
P10809_1023
15.8
P10809_1042
16.7
P10809_1061
35.9
P10809_1081
14.0
P10809_1108
12.6
Non-classical monocyte nTPM: 23.4
Samples: 5
Max nTPM: 49.8
Min nTPM: 12.0
P10809_1005
18.1
P10809_1053
20.7
P10809_1072
49.8
P10809_1082
12.0
P10809_1109
16.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
97.1
Monaco sample
nTPM
Classical monocyte nTPM: 79.9
Samples: 4
Max nTPM: 90.2
Min nTPM: 73.8
RHH5313_R3680
75.9
RHH5221_R3593
90.2
RHH5250_R3622
79.5
RHH5279_R3651
73.8
Intermediate monocyte nTPM: 73.5
Samples: 4
Max nTPM: 82.5
Min nTPM: 58.3
RHH5314_R3681
76.2
RHH5222_R3594
77.1
RHH5251_R3623
58.3
RHH5280_R3652
82.5
Non-classical monocyte nTPM: 97.1
Samples: 4
Max nTPM: 107.5
Min nTPM: 87.7
RHH5315_R3682
91.9
RHH5223_R3595
101.1
RHH5252_R3624
87.7
RHH5281_R3653
107.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.7
Schmiedel sample id
TPM
Classical monocyte TPM: 32.0
Samples: 91
Max TPM: 44.3
Min TPM: 17.0
MONOCYTES_1
44.3
MONOCYTES_2
43.1
MONOCYTES_3
42.4
MONOCYTES_4
40.1
MONOCYTES_5
40.0
MONOCYTES_6
38.9
MONOCYTES_7
37.7
MONOCYTES_8
37.1
MONOCYTES_9
37.1
MONOCYTES_10
37.1
MONOCYTES_11
37.0
MONOCYTES_12
36.8
MONOCYTES_13
36.4
MONOCYTES_14
36.3
MONOCYTES_15
36.2
MONOCYTES_16
36.0
MONOCYTES_17
35.9
MONOCYTES_18
35.7
MONOCYTES_19
35.7
MONOCYTES_20
35.7
MONOCYTES_21
35.5
MONOCYTES_22
35.5
MONOCYTES_23
35.4
MONOCYTES_24
35.2
MONOCYTES_25
35.2
MONOCYTES_26
34.9
MONOCYTES_27
34.9
MONOCYTES_28
34.9
MONOCYTES_29
34.7
MONOCYTES_30
34.6
MONOCYTES_31
34.5
MONOCYTES_32
34.3
MONOCYTES_33
34.1
MONOCYTES_34
34.1
MONOCYTES_35
34.0
MONOCYTES_36
33.8
MONOCYTES_37
33.6
MONOCYTES_38
33.3
MONOCYTES_39
33.1
MONOCYTES_40
33.1
MONOCYTES_41
32.7
MONOCYTES_42
32.6
MONOCYTES_43
32.6
MONOCYTES_44
32.5
MONOCYTES_45
31.9
MONOCYTES_46
31.9
MONOCYTES_47
31.9
MONOCYTES_48
31.5
MONOCYTES_49
31.2
MONOCYTES_50
30.9
MONOCYTES_51
30.8
MONOCYTES_52
30.6
MONOCYTES_53
30.6
MONOCYTES_54
30.5
MONOCYTES_55
30.3
MONOCYTES_56
30.1
MONOCYTES_57
29.9
MONOCYTES_58
29.9
MONOCYTES_59
29.9
MONOCYTES_60
29.6
MONOCYTES_61
29.4
MONOCYTES_62
29.1
MONOCYTES_63
29.0
MONOCYTES_64
29.0
MONOCYTES_65
29.0
MONOCYTES_66
28.9
MONOCYTES_67
28.5
MONOCYTES_68
28.3
MONOCYTES_69
28.3
MONOCYTES_70
28.0
MONOCYTES_71
28.0
MONOCYTES_72
28.0
MONOCYTES_73
28.0
MONOCYTES_74
27.9
MONOCYTES_75
27.8
MONOCYTES_76
27.6
MONOCYTES_77
27.6
MONOCYTES_78
27.5
MONOCYTES_79
27.4
MONOCYTES_80
27.1
MONOCYTES_81
27.0
MONOCYTES_82
27.0
MONOCYTES_83
27.0
MONOCYTES_84
26.8
MONOCYTES_85
26.6
MONOCYTES_86
25.9
MONOCYTES_87
25.0
MONOCYTES_88
24.5
MONOCYTES_89
23.5
MONOCYTES_90
23.2
MONOCYTES_91
17.0
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Non-classical monocyte TPM: 57.7
Samples: 90
Max TPM: 79.8
Min TPM: 41.6
M2_1
79.8
M2_2
78.1
M2_3
77.1
M2_4
76.4
M2_5
75.7
M2_6
75.3
M2_7
75.0
M2_8
73.2
M2_9
72.9
M2_10
72.8
M2_11
72.4
M2_12
71.3
M2_13
69.7
M2_14
68.6
M2_15
67.1
M2_16
66.7
M2_17
66.5
M2_18
66.2
M2_19
65.5
M2_20
65.4
M2_21
64.1
M2_22
63.6
M2_23
63.5
M2_24
63.0
M2_25
62.9
M2_26
62.8
M2_27
62.2
M2_28
61.8
M2_29
61.8
M2_30
61.6
M2_31
61.2
M2_32
61.1
M2_33
60.4
M2_34
60.2
M2_35
59.8
M2_36
59.0
M2_37
59.0
M2_38
58.6
M2_39
58.4
M2_40
57.9
M2_41
57.8
M2_42
56.5
M2_43
56.4
M2_44
56.4
M2_45
56.4
M2_46
56.2
M2_47
56.0
M2_48
55.8
M2_49
55.5
M2_50
55.2
M2_51
54.7
M2_52
54.6
M2_53
54.6
M2_54
54.2
M2_55
54.0
M2_56
53.3
M2_57
53.1
M2_58
53.0
M2_59
53.0
M2_60
52.9
M2_61
52.7
M2_62
52.5
M2_63
52.0
M2_64
51.9
M2_65
51.6
M2_66
51.4
M2_67
51.3
M2_68
51.3
M2_69
50.3
M2_70
50.0
M2_71
49.9
M2_72
49.0
M2_73
48.9
M2_74
48.8
M2_75
48.6
M2_76
48.0
M2_77
47.5
M2_78
46.7
M2_79
46.3
M2_80
45.6
M2_81
45.5
M2_82
45.5
M2_83
44.6
M2_84
44.4
M2_85
44.2
M2_86
43.8
M2_87
43.7
M2_88
43.0
M2_89
42.7
M2_90
41.6
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