MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.1 nTPM
HPA Brain:54.4 nTPM
GTEx:24.1 nTPM
FANTOM5:22.2 Scaled Tags Per Million
Pig:32.2 nTPM
Mouse:14.0 nTPM
Allen mouse:1.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 54.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.5
2666 Male, age 74, left hemisphere 59.8
1830 Male, age 51, unknown 58.5
1870 Female, age 42, unknown 54.4
1833 Male, age 53, unknown 52.2
2019 Male, age 18, unknown 50.4
2411 Female, age 72, unknown 47.7
2586 Male, age 75, left hemisphere 46.7
2828 Female, age 72, unknown 46.6
2219 Male, age 76, both hemispheres 44.7
1827 Male, age 72, unknown 44.2
Dorsal raphe nucleus
nTPM: 49.0
2750 Male, age 76, both hemispheres 55.8
2047 Male, age 72, unknown 51.1
1828 Male, age 53, unknown 49.6
2016 Female, age 72, unknown 45.2
2298 Female, age 72, unknown 43.5
Inferior colliculus
nTPM: 50.9
1890 Male, age 53, unknown 55.3
1848 Female, age 42, unknown 51.1
2849 Male, age 72, unknown 50.7
2097 Female, age 72, unknown 46.4
Median raphe nucleus
nTPM: 50.9
2220 Male, age 76, midline 50.9
Periaquaductal grey, anterior
nTPM: 45.6
1947 Male, age 18, unknown 53.9
2502 Female, age 75, unknown 44.3
1795 Male, age 51, unknown 38.6
Periaquaductal grey, dorsal
nTPM: 53.8
1831 Male, age 72, unknown 64.4
2850 Male, age 76, both hemispheres 53.6
1840 Male, age 53, unknown 49.6
2464 Female, age 72, unknown 47.5
Periaquaductal grey, lateral
nTPM: 41.2
2140 Male, age 76, both hemispheres 43.9
2053 Male, age 18, unknown 43.3
2272 Male, age 74, both hemispheres 36.3
Pretectal area
nTPM: 44.7
2007 Male, age 72, unknown 50.1
1817 Female, age 42, unknown 49.4
2825 Male, age 18, unknown 47.0
2316 Male, age 76, right hemisphere 46.4
1815 Male, age 53, unknown 45.9
2407 Male, age 75, both hemispheres 45.8
2667 Female, age 75, unknown 44.7
2224 Female, age 72, unknown 43.6
1816 Male, age 51, unknown 42.9
1944 Female, age 72, unknown 42.1
2273 Male, age 74, both hemispheres 33.2
Red nucleus
nTPM: 54.4
1865 Male, age 51, unknown 60.3
1821 Female, age 72, unknown 59.6
2588 Male, age 74, left hemisphere 58.7
1954 Female, age 42, unknown 58.3
2584 Male, age 75, left hemisphere 57.1
2503 Female, age 72, unknown 56.5
1904 Male, age 53, unknown 55.3
2823 Male, age 76, right hemisphere 54.3
2227 Male, age 72, unknown 49.8
2769 Male, age 72, unknown 49.3
2725 Female, age 75, unknown 48.3
2785 Male, age 18, unknown 44.9
Substantia nigra
nTPM: 49.7
2409 Female, age 72, unknown 55.7
2665 Male, age 74, both hemispheres 54.1
2241 Male, age 72, unknown 51.8
1889 Female, age 72, unknown 50.4
2583 Male, age 75, right hemisphere 50.4
2699 Male, age 18, unknown 49.4
2590 Female, age 75, unknown 49.3
1851 Male, age 51, unknown 46.7
1941 Male, age 53, unknown 45.4
1916 Female, age 42, unknown 43.6
Superior colliculus
nTPM: 46.1
2668 Female, age 75, unknown 52.5
2587 Male, age 74, left hemisphere 52.0
1895 Male, age 76, right hemisphere 51.2
2087 Female, age 72, unknown 47.5
1839 Male, age 51, unknown 47.3
1913 Female, age 42, unknown 46.3
1796 Male, age 53, unknown 42.3
1995 Male, age 72, unknown 41.9
2261 Male, age 18, unknown 41.5
2664 Male, age 75, both hemispheres 38.4
Ventral tegmental area
nTPM: 50.4
2223 Female, age 72, unknown 57.2
2021 Male, age 53, unknown 52.8
2410 Female, age 72, unknown 48.6
1942 Male, age 51, unknown 48.2
1915 Female, age 42, unknown 47.7
2218 Male, age 76, both hemispheres 47.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 24.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.1
Samples: 183

Max nTPM: 47.5
Min nTPM: 13.5
Std nTPM: 6.1
Median nTPM: 23.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 47.5
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 42.7
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 42.5
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 41.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 39.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 38.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 36.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 36.7
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 36.6
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 34.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 34.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 22.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.2
FF:10158-103A5 76 years, female 22.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 32.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.1
Samples: 4

Max nTPM: 33.7
Min nTPM: 30.0
Sample A Female 33.6
Sample B Female 31.0
Sample C Male 33.7
Sample D Male 30.0
Midbrain
nTPM: 32.2
Samples: 4

Max nTPM: 33.2
Min nTPM: 30.5
Sample A Female 32.9
Sample B Female 33.2
Sample C Male 30.5
Sample D Male 32.1
Periaqueductal gray
nTPM: 29.6
Samples: 3

Max nTPM: 30.1
Min nTPM: 29.4
Sample B Female 29.4
Sample C Male 30.1
Sample D Male 29.4
Superior colliculi
nTPM: 29.0
Samples: 4

Max nTPM: 32.8
Min nTPM: 22.7
Sample A Female 27.8
Sample B Female 22.7
Sample C Male 32.8
Sample D Male 32.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.1
Samples: 4

Max nTPM: 15.5
Min nTPM: 12.3
Sample A Male 12.3
Sample B Male 15.5
Sample C Female 14.7
Sample D Female 13.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
68798861 Antisense, RP_050217_01_E01, Mouse strain C57BL/6J (56 days, male) 1.4

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