MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:87.9 nTPM
HPA Brain:102.0 nTPM
GTEx:87.9 nTPM
FANTOM5:308.9 Scaled Tags Per Million
Pig:37.5 nTPM
Mouse:2.0 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 102.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.3
2586 Male, age 75, left hemisphere 98.5
1833 Male, age 53, unknown 86.5
2666 Male, age 74, left hemisphere 85.1
2019 Male, age 18, unknown 71.7
1830 Male, age 51, unknown 67.7
2828 Female, age 72, unknown 66.9
1870 Female, age 42, unknown 60.3
2411 Female, age 72, unknown 50.1
2219 Male, age 76, both hemispheres 49.9
1827 Male, age 72, unknown 36.4
Dorsal raphe nucleus
nTPM: 67.9
2298 Female, age 72, unknown 77.9
1828 Male, age 53, unknown 75.9
2016 Female, age 72, unknown 69.3
2750 Male, age 76, both hemispheres 64.2
2047 Male, age 72, unknown 52.1
Inferior colliculus
nTPM: 51.5
1890 Male, age 53, unknown 62.6
2849 Male, age 72, unknown 53.1
2097 Female, age 72, unknown 45.3
1848 Female, age 42, unknown 44.9
Median raphe nucleus
nTPM: 74.6
2220 Male, age 76, midline 74.6
Periaquaductal grey, anterior
nTPM: 83.8
1795 Male, age 51, unknown 147.4
1947 Male, age 18, unknown 54.0
2502 Female, age 75, unknown 50.0
Periaquaductal grey, dorsal
nTPM: 95.1
1831 Male, age 72, unknown 180.1
2850 Male, age 76, both hemispheres 110.5
2464 Female, age 72, unknown 53.9
1840 Male, age 53, unknown 35.9
Periaquaductal grey, lateral
nTPM: 102.0
2272 Male, age 74, both hemispheres 143.5
2140 Male, age 76, both hemispheres 94.3
2053 Male, age 18, unknown 68.1
Pretectal area
nTPM: 59.1
2273 Male, age 74, both hemispheres 102.3
2224 Female, age 72, unknown 88.2
2407 Male, age 75, both hemispheres 71.6
2667 Female, age 75, unknown 63.6
2316 Male, age 76, right hemisphere 60.2
1815 Male, age 53, unknown 59.4
1944 Female, age 72, unknown 49.0
2825 Male, age 18, unknown 48.0
1817 Female, age 42, unknown 42.1
2007 Male, age 72, unknown 37.7
1816 Male, age 51, unknown 27.8
Red nucleus
nTPM: 76.5
1904 Male, age 53, unknown 96.8
1865 Male, age 51, unknown 96.2
2769 Male, age 72, unknown 91.2
2785 Male, age 18, unknown 90.2
2725 Female, age 75, unknown 85.2
2227 Male, age 72, unknown 85.1
1821 Female, age 72, unknown 79.8
2823 Male, age 76, right hemisphere 74.1
2584 Male, age 75, left hemisphere 68.4
2503 Female, age 72, unknown 53.4
1954 Female, age 42, unknown 50.5
2588 Male, age 74, left hemisphere 47.7
Substantia nigra
nTPM: 76.8
2699 Male, age 18, unknown 160.8
1851 Male, age 51, unknown 98.2
2665 Male, age 74, both hemispheres 92.6
2590 Female, age 75, unknown 78.5
2583 Male, age 75, right hemisphere 72.5
1916 Female, age 42, unknown 69.8
1941 Male, age 53, unknown 68.4
1889 Female, age 72, unknown 52.2
2409 Female, age 72, unknown 41.5
2241 Male, age 72, unknown 33.8
Superior colliculus
nTPM: 74.7
1995 Male, age 72, unknown 143.5
1913 Female, age 42, unknown 121.2
2587 Male, age 74, left hemisphere 84.1
1796 Male, age 53, unknown 73.0
2668 Female, age 75, unknown 69.5
2664 Male, age 75, both hemispheres 63.9
2087 Female, age 72, unknown 53.5
2261 Male, age 18, unknown 50.6
1839 Male, age 51, unknown 44.0
1895 Male, age 76, right hemisphere 43.9
Ventral tegmental area
nTPM: 79.0
1915 Female, age 42, unknown 114.0
2223 Female, age 72, unknown 104.5
2218 Male, age 76, both hemispheres 83.7
2021 Male, age 53, unknown 62.4
1942 Male, age 51, unknown 61.7
2410 Female, age 72, unknown 47.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 87.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87.9
Samples: 183

Max nTPM: 652.5
Min nTPM: 9.0
Std nTPM: 81.0
Median nTPM: 66.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 652.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 417.7
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 403.5
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 296.6
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 288.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 262.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 254.4
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 253.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 251.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 237.2
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 235.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 308.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 308.9
FF:10158-103A5 76 years, female 308.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 37.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.5
Samples: 4

Max nTPM: 56.8
Min nTPM: 27.5
Sample A Female 27.5
Sample B Female 56.8
Sample C Male 29.4
Sample D Male 36.4
Midbrain
nTPM: 19.0
Samples: 4

Max nTPM: 30.7
Min nTPM: 9.8
Sample A Female 30.7
Sample B Female 14.4
Sample C Male 20.9
Sample D Male 9.8
Periaqueductal gray
nTPM: 16.1
Samples: 3

Max nTPM: 22.8
Min nTPM: 11.9
Sample B Female 11.9
Sample C Male 22.8
Sample D Male 13.5
Superior colliculi
nTPM: 28.3
Samples: 4

Max nTPM: 34.3
Min nTPM: 22.8
Sample A Female 34.3
Sample B Female 32.7
Sample C Male 22.8
Sample D Male 23.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.0
Samples: 4

Max nTPM: 2.4
Min nTPM: 1.5
Sample A Male 2.2
Sample B Male 1.5
Sample C Female 1.9
Sample D Female 2.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68445925 Antisense, RP_050113_01_B11, Mouse strain C57BL/6J (56 days, male) 0.7

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