MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.5 nTPM
HPA Brain:17.2 nTPM
GTEx:25.5 nTPM
FANTOM5:14.9 Scaled Tags Per Million
Pig:3.2 nTPM
Mouse:10.1 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 17.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.7
2586 Male, age 75, left hemisphere 17.0
2411 Female, age 72, unknown 14.7
1870 Female, age 42, unknown 13.4
2019 Male, age 18, unknown 13.3
1827 Male, age 72, unknown 13.2
1833 Male, age 53, unknown 11.9
2828 Female, age 72, unknown 11.7
1830 Male, age 51, unknown 11.6
2666 Male, age 74, left hemisphere 11.4
2219 Male, age 76, both hemispheres 9.1
Dorsal raphe nucleus
nTPM: 15.1
2298 Female, age 72, unknown 20.3
1828 Male, age 53, unknown 14.8
2016 Female, age 72, unknown 14.7
2047 Male, age 72, unknown 13.1
2750 Male, age 76, both hemispheres 12.7
Inferior colliculus
nTPM: 11.2
2097 Female, age 72, unknown 13.3
1890 Male, age 53, unknown 11.3
1848 Female, age 42, unknown 10.5
2849 Male, age 72, unknown 9.7
Median raphe nucleus
nTPM: 14.1
2220 Male, age 76, midline 14.1
Periaquaductal grey, anterior
nTPM: 17.2
2502 Female, age 75, unknown 18.4
1947 Male, age 18, unknown 18.3
1795 Male, age 51, unknown 14.8
Periaquaductal grey, dorsal
nTPM: 11.9
2850 Male, age 76, both hemispheres 13.4
1840 Male, age 53, unknown 12.4
1831 Male, age 72, unknown 11.4
2464 Female, age 72, unknown 10.6
Periaquaductal grey, lateral
nTPM: 11.8
2140 Male, age 76, both hemispheres 13.0
2272 Male, age 74, both hemispheres 12.7
2053 Male, age 18, unknown 9.6
Pretectal area
nTPM: 13.0
2007 Male, age 72, unknown 17.1
2273 Male, age 74, both hemispheres 15.0
2224 Female, age 72, unknown 14.6
1816 Male, age 51, unknown 13.0
1817 Female, age 42, unknown 12.9
1815 Male, age 53, unknown 12.4
1944 Female, age 72, unknown 12.2
2825 Male, age 18, unknown 12.0
2407 Male, age 75, both hemispheres 11.6
2667 Female, age 75, unknown 11.6
2316 Male, age 76, right hemisphere 11.2
Red nucleus
nTPM: 14.0
2503 Female, age 72, unknown 17.9
2227 Male, age 72, unknown 15.9
2725 Female, age 75, unknown 15.7
2785 Male, age 18, unknown 15.1
1954 Female, age 42, unknown 14.5
2769 Male, age 72, unknown 14.2
2584 Male, age 75, left hemisphere 13.7
2588 Male, age 74, left hemisphere 13.1
1904 Male, age 53, unknown 13.0
1865 Male, age 51, unknown 12.6
1821 Female, age 72, unknown 11.6
2823 Male, age 76, right hemisphere 10.8
Substantia nigra
nTPM: 12.7
1916 Female, age 42, unknown 18.8
1851 Male, age 51, unknown 16.4
1941 Male, age 53, unknown 13.3
2665 Male, age 74, both hemispheres 12.7
2583 Male, age 75, right hemisphere 12.4
1889 Female, age 72, unknown 11.9
2699 Male, age 18, unknown 11.3
2241 Male, age 72, unknown 10.6
2590 Female, age 75, unknown 10.2
2409 Female, age 72, unknown 9.6
Superior colliculus
nTPM: 11.7
1796 Male, age 53, unknown 14.5
2261 Male, age 18, unknown 13.6
2668 Female, age 75, unknown 13.1
1913 Female, age 42, unknown 13.0
1995 Male, age 72, unknown 11.3
2587 Male, age 74, left hemisphere 11.3
2664 Male, age 75, both hemispheres 10.7
2087 Female, age 72, unknown 10.6
1839 Male, age 51, unknown 10.0
1895 Male, age 76, right hemisphere 9.2
Ventral tegmental area
nTPM: 13.2
1915 Female, age 42, unknown 16.1
1942 Male, age 51, unknown 15.7
2410 Female, age 72, unknown 13.1
2223 Female, age 72, unknown 11.8
2218 Male, age 76, both hemispheres 11.2
2021 Male, age 53, unknown 11.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 25.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.5
Samples: 183

Max nTPM: 97.8
Min nTPM: 6.6
Std nTPM: 15.0
Median nTPM: 21.0
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 97.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 90.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 80.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 80.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 75.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 73.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 68.2
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 67.0
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 59.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 55.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 55.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 14.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.9
FF:10158-103A5 76 years, female 14.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 3.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.3
Samples: 4

Max nTPM: 5.0
Min nTPM: 1.4
Sample A Female 5.0
Sample B Female 3.0
Sample C Male 3.6
Sample D Male 1.4
Midbrain
nTPM: 3.1
Samples: 4

Max nTPM: 4.5
Min nTPM: 2.2
Sample A Female 2.3
Sample B Female 3.3
Sample C Male 2.2
Sample D Male 4.5
Periaqueductal gray
nTPM: 2.9
Samples: 3

Max nTPM: 3.4
Min nTPM: 2.4
Sample B Female 2.4
Sample C Male 2.8
Sample D Male 3.4
Superior colliculi
nTPM: 3.2
Samples: 4

Max nTPM: 4.7
Min nTPM: 1.8
Sample A Female 4.7
Sample B Female 3.3
Sample C Male 1.8
Sample D Male 3.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 10.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.1
Samples: 4

Max nTPM: 13.7
Min nTPM: 6.6
Sample A Male 7.7
Sample B Male 6.6
Sample C Female 12.3
Sample D Female 13.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71656749 Antisense, RP_050927_04_C04, Mouse strain C57BL/6J (56 days, male) 0.0

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