MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.3 nTPM
HPA Brain:67.1 nTPM
GTEx:31.3 nTPM
FANTOM5:16.2 Scaled Tags Per Million
Pig:25.3 nTPM
Mouse:14.6 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 67.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.4
2411 Female, age 72, unknown 69.5
1830 Male, age 51, unknown 69.0
1833 Male, age 53, unknown 66.5
2019 Male, age 18, unknown 56.1
2586 Male, age 75, left hemisphere 52.6
1870 Female, age 42, unknown 52.3
2219 Male, age 76, both hemispheres 47.1
2666 Male, age 74, left hemisphere 42.9
2828 Female, age 72, unknown 42.1
1827 Male, age 72, unknown 36.2
Dorsal raphe nucleus
nTPM: 39.7
2750 Male, age 76, both hemispheres 66.6
1828 Male, age 53, unknown 41.7
2016 Female, age 72, unknown 35.0
2047 Male, age 72, unknown 31.7
2298 Female, age 72, unknown 23.5
Inferior colliculus
nTPM: 34.4
1890 Male, age 53, unknown 38.0
2849 Male, age 72, unknown 36.8
1848 Female, age 42, unknown 35.8
2097 Female, age 72, unknown 27.1
Median raphe nucleus
nTPM: 36.2
2220 Male, age 76, midline 36.2
Periaquaductal grey, anterior
nTPM: 30.8
1947 Male, age 18, unknown 33.0
1795 Male, age 51, unknown 30.0
2502 Female, age 75, unknown 29.3
Periaquaductal grey, dorsal
nTPM: 27.7
2464 Female, age 72, unknown 41.4
1831 Male, age 72, unknown 32.0
1840 Male, age 53, unknown 19.5
2850 Male, age 76, both hemispheres 17.9
Periaquaductal grey, lateral
nTPM: 33.9
2272 Male, age 74, both hemispheres 41.1
2053 Male, age 18, unknown 36.8
2140 Male, age 76, both hemispheres 23.9
Pretectal area
nTPM: 36.9
2407 Male, age 75, both hemispheres 53.1
2316 Male, age 76, right hemisphere 50.0
1815 Male, age 53, unknown 41.9
2825 Male, age 18, unknown 39.7
2667 Female, age 75, unknown 35.5
2273 Male, age 74, both hemispheres 35.3
1817 Female, age 42, unknown 33.5
2007 Male, age 72, unknown 33.2
2224 Female, age 72, unknown 31.8
1944 Female, age 72, unknown 26.4
1816 Male, age 51, unknown 25.9
Red nucleus
nTPM: 67.1
2823 Male, age 76, right hemisphere 81.2
1904 Male, age 53, unknown 77.6
2227 Male, age 72, unknown 74.3
1865 Male, age 51, unknown 71.6
2588 Male, age 74, left hemisphere 71.3
2769 Male, age 72, unknown 69.6
2503 Female, age 72, unknown 69.5
1821 Female, age 72, unknown 64.2
2584 Male, age 75, left hemisphere 62.4
2785 Male, age 18, unknown 61.7
1954 Female, age 42, unknown 52.8
2725 Female, age 75, unknown 49.2
Substantia nigra
nTPM: 40.8
2583 Male, age 75, right hemisphere 54.8
2590 Female, age 75, unknown 54.7
2409 Female, age 72, unknown 51.6
2699 Male, age 18, unknown 43.1
1851 Male, age 51, unknown 39.1
1889 Female, age 72, unknown 36.8
1941 Male, age 53, unknown 36.0
2241 Male, age 72, unknown 34.4
2665 Male, age 74, both hemispheres 32.2
1916 Female, age 42, unknown 25.5
Superior colliculus
nTPM: 45.2
1913 Female, age 42, unknown 64.3
1995 Male, age 72, unknown 60.7
1895 Male, age 76, right hemisphere 52.8
1839 Male, age 51, unknown 46.4
2668 Female, age 75, unknown 45.9
2587 Male, age 74, left hemisphere 45.7
2664 Male, age 75, both hemispheres 39.4
1796 Male, age 53, unknown 34.3
2087 Female, age 72, unknown 31.9
2261 Male, age 18, unknown 30.9
Ventral tegmental area
nTPM: 47.2
2223 Female, age 72, unknown 72.9
2410 Female, age 72, unknown 52.1
1942 Male, age 51, unknown 44.0
2021 Male, age 53, unknown 40.2
2218 Male, age 76, both hemispheres 40.0
1915 Female, age 42, unknown 33.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 31.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.3
Samples: 183

Max nTPM: 162.3
Min nTPM: 4.0
Std nTPM: 20.1
Median nTPM: 25.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 162.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 126.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 97.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 95.6
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 79.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 77.1
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 75.3
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 70.5
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 65.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 63.0
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 61.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.2
FF:10158-103A5 76 years, female 16.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 25.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.5
Samples: 4

Max nTPM: 32.0
Min nTPM: 14.3
Sample A Female 24.7
Sample B Female 14.3
Sample C Male 19.0
Sample D Male 32.0
Midbrain
nTPM: 25.3
Samples: 4

Max nTPM: 51.7
Min nTPM: 14.0
Sample A Female 51.7
Sample B Female 21.0
Sample C Male 14.0
Sample D Male 14.4
Periaqueductal gray
nTPM: 19.0
Samples: 3

Max nTPM: 20.4
Min nTPM: 17.7
Sample B Female 20.4
Sample C Male 17.7
Sample D Male 18.8
Superior colliculi
nTPM: 17.2
Samples: 4

Max nTPM: 22.4
Min nTPM: 8.9
Sample A Female 19.8
Sample B Female 8.9
Sample C Male 17.6
Sample D Male 22.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.7
Samples: 4

Max nTPM: 18.3
Min nTPM: 11.8
Sample A Male 16.1
Sample B Male 11.8
Sample C Female 12.4
Sample D Female 18.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
68193027 Antisense, RP_040825_01_E03, Mouse strain C57BL/6J (56 days, male) 0.5

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