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  • ATP6V1F
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:311.8 nTPM
HPA Brain:146.9 nTPM
GTEx:311.8 nTPM
FANTOM5:172.7 Scaled Tags Per Million
Pig:92.1 nTPM
Mouse:342.9 nTPM
Allen mouse:17.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.9
Sample id Sample description nTPM
Amygdala
nTPM: 146.9
2814 Male, age 76, right hemisphere 199.9
1987 Female, age 91, left hemisphere 140.5
2517 Female, age 94, left hemisphere 137.5
2514 Male, age 75, right hemisphere 131.6
2695 Female, age 67, right hemisphere 124.9
Basal amygdala
nTPM: 143.4
2243 Female, age 91, right hemisphere 161.2
2110 Male, age 80, left hemisphere 154.9
2685 Female, age 94, left hemisphere 154.4
1955 Male, age 76, both hemispheres 149.4
2609 Male, age 75, right hemisphere 138.1
2827 Female, age 67, right hemisphere 102.6
Central amygdala
nTPM: 144.7
2826 Female, age 94, left hemisphere 166.1
1905 Male, age 76, both hemispheres 160.5
2239 Male, age 80, left hemisphere 149.4
2701 Female, age 91, right hemisphere 125.4
2515 Male, age 75, right hemisphere 122.3
Corticomedial amygdala
nTPM: 145.2
2829 Male, age 80, left hemisphere 188.6
2242 Female, age 91, right hemisphere 173.2
2240 Male, age 76, both hemispheres 144.9
2429 Female, age 94, left hemisphere 137.8
2428 Male, age 75, right hemisphere 120.0
2535 Female, age 67, right hemisphere 106.6
Lateral amygdala
nTPM: 130.0
2534 Female, age 94, left hemisphere 169.3
1883 Male, age 76, both hemispheres 157.0
2516 Male, age 75, right hemisphere 123.5
2255 Female, age 91, right hemisphere 115.7
2256 Male, age 80, left hemisphere 115.3
2830 Female, age 67, right hemisphere 99.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

311.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 311.8
Samples: 181

Max nTPM: 757.2
Min nTPM: 152.3
Std nTPM: 100.7
Median nTPM: 299.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 757.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 701.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 693.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 678.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 595.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 534.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 499.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 486.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 475.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 465.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 464.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 457.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 446.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 436.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 436.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 435.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 434.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 433.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 426.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 425.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 420.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 417.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 415.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 414.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 410.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 407.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 402.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 401.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 396.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 393.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 386.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 381.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 379.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 375.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 374.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 372.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 371.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 369.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 368.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 367.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 365.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 363.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 363.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 361.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 360.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 359.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 358.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 357.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 355.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 354.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 354.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 353.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 349.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 349.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 347.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 347.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 346.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 344.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 342.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 339.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 336.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 335.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 334.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 333.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 332.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 330.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 330.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 329.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 328.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 327.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 321.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 320.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 317.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 314.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 314.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 314.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 314.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 313.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 311.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 310.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 309.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 309.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 309.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 305.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 305.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 304.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 302.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 301.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 301.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 300.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 299.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 296.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 293.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 292.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 290.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 287.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 287.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 287.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 286.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 286.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 285.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 282.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 280.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 280.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 279.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 279.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 279.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 279.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 276.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 276.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 275.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 274.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 273.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 272.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 271.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 268.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 268.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 266.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 266.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 265.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 264.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 263.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 261.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 261.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 259.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 258.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 258.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 255.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 254.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 254.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 250.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 250.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 248.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 245.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 245.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 244.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 242.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 241.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 240.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 240.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 239.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 237.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 234.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 234.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 234.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 233.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 227.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 223.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 222.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 220.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 218.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 218.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 217.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 215.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 210.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 207.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 206.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 205.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 204.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 203.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 202.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 201.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 200.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 198.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 197.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 194.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 187.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 186.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 186.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 184.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 183.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 179.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 179.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 178.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 178.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 176.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 175.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 173.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 172.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 172.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 152.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

172.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 172.7
FF:10151-102I7 76 years, female 172.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.1
Pig sample Sample description nTPM
Amygdala
nTPM: 92.2
Samples: 4

Max nTPM: 127.0
Min nTPM: 78.7
Sample A Female 127.0
Sample B Female 83.1
Sample C Male 78.7
Sample D Male 79.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

342.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 342.9
Samples: 4

Max nTPM: 352.5
Min nTPM: 333.0
Sample A Male 344.9
Sample B Male 352.5
Sample C Female 333.0
Sample D Female 341.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

17.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 17.0
393251 Antisense, RP_040804_02_H11, Mouse strain C57BL/6J (56 days, male) 17.0

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