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ATP6V1F
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  • ATP6V1F
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:198.6 nTPM
HPA Brain:146.6 nTPM
GTEx:198.6 nTPM
FANTOM5:143.8 Scaled Tags Per Million
Pig:166.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 132.1
2565 Male, age 75, midline 149.3
1981 Female, age 72, midline 149.2
2194 Female, age 79, both hemispheres 147.3
2816 Male, age 47, midline 110.4
2048 Male, age 55, midline 104.5
Cervical spinal cord, dorsal horn
nTPM: 146.6
2069 Male, age 47, both hemispheres 166.2
2173 Female, age 72, unknown 154.6
2297 Male, age 75, both hemispheres 153.6
2721 Male, age 90, both hemispheres 151.6
2296 Male, age 66, both hemispheres 129.0
1877 Male, age 55, unknown 124.8
Cervical spinal cord, ventral horn
nTPM: 139.2
2480 Male, age 75, both hemispheres 147.5
2809 Male, age 90, both hemispheres 142.6
2098 Female, age 72, unknown 138.1
2068 Male, age 55, unknown 137.2
2820 Female, age 79, both hemispheres 136.6
2295 Male, age 66, both hemispheres 133.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

198.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 198.6
Samples: 204

Max nTPM: 560.4
Min nTPM: 115.6
Std nTPM: 44.9
Median nTPM: 191.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 560.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 332.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 314.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 289.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 286.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 284.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 278.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 275.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 272.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 272.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 271.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 267.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 267.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 260.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 257.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 255.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 253.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 250.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 248.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 246.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 244.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 243.4
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 243.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 242.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 241.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 239.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 239.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 237.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 236.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 236.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 234.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 234.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 232.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 232.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 232.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 232.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 231.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 231.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 229.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 227.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 227.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 225.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 224.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 224.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 224.0
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 220.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 219.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 218.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 218.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 217.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 217.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 217.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 216.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 216.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 216.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 215.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 214.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 214.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 213.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 213.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 212.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 212.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 212.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 211.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 211.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 210.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 209.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 209.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 208.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 208.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 208.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 208.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 208.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 207.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 207.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 207.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 206.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 206.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 206.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 205.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 205.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 203.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 203.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 201.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 201.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 201.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 201.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 200.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 200.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 199.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 199.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 198.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 197.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 196.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 195.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 195.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 195.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 195.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 194.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 194.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 194.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 192.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 191.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 191.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 190.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 190.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 190.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 190.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 190.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 188.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 188.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 188.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 187.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 187.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 187.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 186.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 185.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 185.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 184.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 184.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 184.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 183.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 183.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 182.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 182.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 181.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 181.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 181.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 180.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 180.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 180.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 180.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 179.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 179.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 179.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 179.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 179.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 178.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 177.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 177.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 177.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 175.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 175.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 175.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 175.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 175.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 175.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 174.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 174.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 173.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 173.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 172.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 171.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 171.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 171.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 170.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 170.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 170.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 169.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 168.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 168.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 168.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 167.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 167.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 167.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 166.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 166.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 166.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 165.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 165.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 164.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 163.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 162.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 160.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 160.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 160.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 156.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 156.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 156.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 155.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 155.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 154.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 153.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 151.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 150.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 147.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 146.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 146.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 145.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 144.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 144.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 143.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 139.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 138.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 137.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 135.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 135.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 135.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 135.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 134.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 133.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 132.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 126.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 115.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

143.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 143.8
FF:10181-103D1 60 years, female 171.2
FF:10159-103A6 76 years, female 116.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

166.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 122.5
Samples: 4

Max nTPM: 136.6
Min nTPM: 107.7
Sample A Female 136.6
Sample B Female 107.7
Sample C Male 115.7
Sample D Male 129.9
Ventral spinal cord
nTPM: 166.5
Samples: 4

Max nTPM: 177.7
Min nTPM: 148.4
Sample A Female 165.7
Sample B Female 174.3
Sample C Male 177.7
Sample D Male 148.4

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