MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:256.8 nTPM
HPA Brain:161.3 nTPM
GTEx:256.8 nTPM
FANTOM5:118.4 Scaled Tags Per Million
Pig:155.2 nTPM
Mouse:252.6 nTPM
Allen mouse:11.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 161.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 138.2
2666 Male, age 74, left hemisphere 197.9
2019 Male, age 18, unknown 160.4
1827 Male, age 72, unknown 143.0
2219 Male, age 76, both hemispheres 139.3
2411 Female, age 72, unknown 132.1
1833 Male, age 53, unknown 126.8
2586 Male, age 75, left hemisphere 126.3
2828 Female, age 72, unknown 125.6
1870 Female, age 42, unknown 118.6
1830 Male, age 51, unknown 111.8
Dorsal raphe nucleus
nTPM: 135.5
2047 Male, age 72, unknown 152.3
2298 Female, age 72, unknown 148.4
1828 Male, age 53, unknown 142.5
2750 Male, age 76, both hemispheres 136.1
2016 Female, age 72, unknown 98.3
Inferior colliculus
nTPM: 126.7
2097 Female, age 72, unknown 134.2
2849 Male, age 72, unknown 129.2
1890 Male, age 53, unknown 124.7
1848 Female, age 42, unknown 118.7
Median raphe nucleus
nTPM: 160.3
2220 Male, age 76, midline 160.3
Periaquaductal grey, anterior
nTPM: 132.3
1795 Male, age 51, unknown 154.8
2502 Female, age 75, unknown 123.2
1947 Male, age 18, unknown 118.8
Periaquaductal grey, dorsal
nTPM: 119.8
2850 Male, age 76, both hemispheres 129.4
1840 Male, age 53, unknown 119.7
1831 Male, age 72, unknown 119.0
2464 Female, age 72, unknown 111.2
Periaquaductal grey, lateral
nTPM: 116.3
2272 Male, age 74, both hemispheres 132.8
2053 Male, age 18, unknown 116.3
2140 Male, age 76, both hemispheres 99.8
Pretectal area
nTPM: 152.2
1817 Female, age 42, unknown 209.0
1816 Male, age 51, unknown 192.9
1944 Female, age 72, unknown 190.9
2007 Male, age 72, unknown 180.8
1815 Male, age 53, unknown 170.5
2667 Female, age 75, unknown 150.6
2224 Female, age 72, unknown 135.9
2825 Male, age 18, unknown 117.3
2273 Male, age 74, both hemispheres 115.7
2407 Male, age 75, both hemispheres 115.4
2316 Male, age 76, right hemisphere 94.7
Red nucleus
nTPM: 122.0
2785 Male, age 18, unknown 148.7
1821 Female, age 72, unknown 147.5
2584 Male, age 75, left hemisphere 131.8
2823 Male, age 76, right hemisphere 118.9
2769 Male, age 72, unknown 117.1
1865 Male, age 51, unknown 117.0
1954 Female, age 42, unknown 116.7
2227 Male, age 72, unknown 116.1
2503 Female, age 72, unknown 116.1
2725 Female, age 75, unknown 114.6
1904 Male, age 53, unknown 111.8
2588 Male, age 74, left hemisphere 107.7
Substantia nigra
nTPM: 161.3
1916 Female, age 42, unknown 227.7
1889 Female, age 72, unknown 190.5
1941 Male, age 53, unknown 175.8
1851 Male, age 51, unknown 173.0
2665 Male, age 74, both hemispheres 168.3
2241 Male, age 72, unknown 140.2
2699 Male, age 18, unknown 139.8
2409 Female, age 72, unknown 138.8
2583 Male, age 75, right hemisphere 137.8
2590 Female, age 75, unknown 121.3
Superior colliculus
nTPM: 133.9
2668 Female, age 75, unknown 190.4
2087 Female, age 72, unknown 157.0
1796 Male, age 53, unknown 144.0
2261 Male, age 18, unknown 143.2
2587 Male, age 74, left hemisphere 138.1
1913 Female, age 42, unknown 124.3
1839 Male, age 51, unknown 122.1
1895 Male, age 76, right hemisphere 113.9
1995 Male, age 72, unknown 108.8
2664 Male, age 75, both hemispheres 97.6
Ventral tegmental area
nTPM: 149.2
2410 Female, age 72, unknown 183.8
1915 Female, age 42, unknown 169.7
2218 Male, age 76, both hemispheres 169.4
2223 Female, age 72, unknown 136.1
1942 Male, age 51, unknown 119.2
2021 Male, age 53, unknown 116.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 256.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 256.8
Samples: 183

Max nTPM: 492.3
Min nTPM: 122.1
Std nTPM: 78.9
Median nTPM: 235.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 492.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 487.7
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 470.9
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 454.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 449.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 429.2
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 429.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 415.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 410.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 398.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 389.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 118.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 118.4
FF:10158-103A5 76 years, female 118.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 155.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 142.3
Samples: 4

Max nTPM: 211.6
Min nTPM: 94.5
Sample A Female 211.6
Sample B Female 108.3
Sample C Male 154.7
Sample D Male 94.5
Midbrain
nTPM: 146.8
Samples: 4

Max nTPM: 164.3
Min nTPM: 121.8
Sample A Female 159.5
Sample B Female 121.8
Sample C Male 164.3
Sample D Male 141.5
Periaqueductal gray
nTPM: 108.3
Samples: 3

Max nTPM: 128.4
Min nTPM: 98.1
Sample B Female 98.5
Sample C Male 128.4
Sample D Male 98.1
Superior colliculi
nTPM: 155.2
Samples: 4

Max nTPM: 191.3
Min nTPM: 109.6
Sample A Female 191.3
Sample B Female 109.6
Sample C Male 188.1
Sample D Male 131.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 252.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 252.7
Samples: 4

Max nTPM: 291.7
Min nTPM: 219.3
Sample A Male 291.7
Sample B Male 241.4
Sample C Female 219.3
Sample D Female 258.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 11.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.3
393251 Antisense, RP_040804_02_H11, Mouse strain C57BL/6J (56 days, male) 11.3

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