MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.0 nTPM
HPA Brain:10.5 nTPM
GTEx:15.0 nTPM
FANTOM5:43.5 Scaled Tags Per Million
Pig:9.1 nTPM
Mouse:29.7 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 10.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.4
1870 Female, age 42, unknown 12.2
2666 Male, age 74, left hemisphere 9.0
2019 Male, age 18, unknown 8.9
1833 Male, age 53, unknown 8.7
1827 Male, age 72, unknown 8.6
1830 Male, age 51, unknown 8.5
2411 Female, age 72, unknown 8.5
2828 Female, age 72, unknown 7.7
2586 Male, age 75, left hemisphere 6.7
2219 Male, age 76, both hemispheres 4.9
Dorsal raphe nucleus
nTPM: 10.0
2016 Female, age 72, unknown 11.3
2298 Female, age 72, unknown 11.2
1828 Male, age 53, unknown 9.8
2750 Male, age 76, both hemispheres 9.2
2047 Male, age 72, unknown 8.7
Inferior colliculus
nTPM: 10.3
2097 Female, age 72, unknown 13.0
1848 Female, age 42, unknown 10.1
1890 Male, age 53, unknown 9.5
2849 Male, age 72, unknown 8.8
Median raphe nucleus
nTPM: 8.4
2220 Male, age 76, midline 8.4
Periaquaductal grey, anterior
nTPM: 9.2
2502 Female, age 75, unknown 10.3
1947 Male, age 18, unknown 9.9
1795 Male, age 51, unknown 7.5
Periaquaductal grey, dorsal
nTPM: 10.5
2850 Male, age 76, both hemispheres 12.5
1840 Male, age 53, unknown 11.2
1831 Male, age 72, unknown 10.3
2464 Female, age 72, unknown 8.0
Periaquaductal grey, lateral
nTPM: 9.4
2140 Male, age 76, both hemispheres 10.2
2053 Male, age 18, unknown 9.1
2272 Male, age 74, both hemispheres 9.0
Pretectal area
nTPM: 9.2
2316 Male, age 76, right hemisphere 10.8
2273 Male, age 74, both hemispheres 10.6
1817 Female, age 42, unknown 10.1
2224 Female, age 72, unknown 10.1
1815 Male, age 53, unknown 9.5
2825 Male, age 18, unknown 9.5
1944 Female, age 72, unknown 9.3
2007 Male, age 72, unknown 8.5
1816 Male, age 51, unknown 8.1
2667 Female, age 75, unknown 7.5
2407 Male, age 75, both hemispheres 6.8
Red nucleus
nTPM: 10.2
1821 Female, age 72, unknown 14.2
1954 Female, age 42, unknown 12.4
2503 Female, age 72, unknown 11.6
1904 Male, age 53, unknown 11.0
1865 Male, age 51, unknown 10.9
2725 Female, age 75, unknown 10.1
2227 Male, age 72, unknown 10.0
2823 Male, age 76, right hemisphere 9.5
2769 Male, age 72, unknown 9.4
2785 Male, age 18, unknown 9.4
2584 Male, age 75, left hemisphere 7.0
2588 Male, age 74, left hemisphere 7.0
Substantia nigra
nTPM: 8.1
1889 Female, age 72, unknown 10.7
2241 Male, age 72, unknown 9.3
2665 Male, age 74, both hemispheres 9.0
1851 Male, age 51, unknown 8.9
2590 Female, age 75, unknown 8.6
2699 Male, age 18, unknown 8.2
1916 Female, age 42, unknown 7.2
1941 Male, age 53, unknown 7.2
2409 Female, age 72, unknown 6.0
2583 Male, age 75, right hemisphere 6.0
Superior colliculus
nTPM: 9.3
2587 Male, age 74, left hemisphere 11.7
1995 Male, age 72, unknown 11.5
1913 Female, age 42, unknown 11.3
1839 Male, age 51, unknown 10.1
1895 Male, age 76, right hemisphere 9.3
2668 Female, age 75, unknown 9.2
2087 Female, age 72, unknown 8.4
2261 Male, age 18, unknown 8.0
1796 Male, age 53, unknown 7.6
2664 Male, age 75, both hemispheres 6.2
Ventral tegmental area
nTPM: 8.6
1915 Female, age 42, unknown 9.4
2021 Male, age 53, unknown 9.4
2410 Female, age 72, unknown 8.9
1942 Male, age 51, unknown 8.4
2223 Female, age 72, unknown 8.1
2218 Male, age 76, both hemispheres 7.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.0
Samples: 183

Max nTPM: 28.0
Min nTPM: 7.2
Std nTPM: 4.0
Median nTPM: 14.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 28.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 25.4
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 24.3
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 24.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 24.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 23.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 23.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 23.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 22.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 22.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 22.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 43.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.5
FF:10158-103A5 76 years, female 43.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.4
Samples: 4

Max nTPM: 9.5
Min nTPM: 6.8
Sample A Female 9.5
Sample B Female 9.1
Sample C Male 6.8
Sample D Male 8.0
Midbrain
nTPM: 9.1
Samples: 4

Max nTPM: 12.4
Min nTPM: 6.8
Sample A Female 12.4
Sample B Female 10.1
Sample C Male 7.0
Sample D Male 6.8
Periaqueductal gray
nTPM: 7.6
Samples: 3

Max nTPM: 7.8
Min nTPM: 7.4
Sample B Female 7.4
Sample C Male 7.6
Sample D Male 7.8
Superior colliculi
nTPM: 9.0
Samples: 4

Max nTPM: 11.0
Min nTPM: 7.9
Sample A Female 9.0
Sample B Female 11.0
Sample C Male 8.0
Sample D Male 7.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 29.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.7
Samples: 4

Max nTPM: 31.4
Min nTPM: 27.8
Sample A Male 28.7
Sample B Male 30.9
Sample C Female 31.4
Sample D Female 27.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69014734 Antisense, RP_050310_01_F03, Mouse strain C57BL/6J (56 days, male) 0.1

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