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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:466.4 nTPM
HPA Brain:454.1 nTPM
GTEx:466.4 nTPM
FANTOM5:585.4 Scaled Tags Per Million
Pig:250.9 nTPM
Mouse:774.9 nTPM
Allen mouse:26.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

454.1
Sample id Sample description nTPM
Amygdala
nTPM: 422.8
2695 Female, age 67, right hemisphere 502.4
2814 Male, age 76, right hemisphere 488.4
1987 Female, age 91, left hemisphere 409.0
2517 Female, age 94, left hemisphere 358.8
2514 Male, age 75, right hemisphere 355.6
Basal amygdala
nTPM: 425.1
2243 Female, age 91, right hemisphere 483.1
2609 Male, age 75, right hemisphere 442.3
2110 Male, age 80, left hemisphere 442.0
2685 Female, age 94, left hemisphere 427.1
1955 Male, age 76, both hemispheres 393.0
2827 Female, age 67, right hemisphere 363.2
Central amygdala
nTPM: 454.1
2826 Female, age 94, left hemisphere 517.0
1905 Male, age 76, both hemispheres 447.8
2701 Female, age 91, right hemisphere 441.4
2239 Male, age 80, left hemisphere 435.7
2515 Male, age 75, right hemisphere 428.6
Corticomedial amygdala
nTPM: 413.4
2829 Male, age 80, left hemisphere 499.4
2242 Female, age 91, right hemisphere 452.8
2429 Female, age 94, left hemisphere 396.2
2428 Male, age 75, right hemisphere 389.4
2535 Female, age 67, right hemisphere 377.7
2240 Male, age 76, both hemispheres 365.2
Lateral amygdala
nTPM: 413.2
2534 Female, age 94, left hemisphere 515.0
1883 Male, age 76, both hemispheres 439.2
2516 Male, age 75, right hemisphere 418.1
2255 Female, age 91, right hemisphere 396.1
2830 Female, age 67, right hemisphere 365.6
2256 Male, age 80, left hemisphere 345.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

466.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 466.4
Samples: 181

Max nTPM: 1235.8
Min nTPM: 227.8
Std nTPM: 164.1
Median nTPM: 439.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1235.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1206.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 932.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 917.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 877.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 813.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 795.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 780.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 773.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 762.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 751.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 750.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 740.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 720.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 702.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 694.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 691.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 686.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 647.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 643.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 624.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 617.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 613.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 609.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 608.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 607.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 606.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 603.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 603.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 600.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 600.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 598.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 591.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 589.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 586.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 585.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 572.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 570.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 567.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 565.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 565.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 564.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 564.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 559.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 554.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 552.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 547.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 544.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 541.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 541.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 536.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 530.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 529.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 526.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 525.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 524.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 524.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 519.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 518.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 517.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 508.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 499.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 496.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 495.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 493.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 492.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 492.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 489.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 488.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 488.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 484.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 478.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 478.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 477.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 477.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 476.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 475.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 471.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 470.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 468.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 468.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 461.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 458.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 456.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 456.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 449.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 446.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 443.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 442.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 441.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 439.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 434.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 428.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 417.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 417.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 414.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 413.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 411.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 408.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 408.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 407.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 405.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 405.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 404.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 403.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 401.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 399.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 399.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 398.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 395.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 394.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 394.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 393.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 393.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 393.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 387.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 384.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 382.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 379.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 377.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 373.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 373.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 372.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 367.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 361.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 357.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 357.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 356.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 356.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 356.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 349.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 348.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 346.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 345.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 344.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 342.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 341.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 340.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 339.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 339.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 333.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 333.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 332.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 331.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 329.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 328.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 326.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 322.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 321.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 321.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 320.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 319.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 319.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 316.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 316.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 316.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 314.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 313.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 313.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 312.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 310.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 309.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 309.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 309.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 308.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 304.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 300.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 293.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 291.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 281.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 280.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 269.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 265.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 251.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 242.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 241.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 241.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 240.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 236.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 236.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 227.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

585.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 585.4
FF:10151-102I7 76 years, female 585.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

250.9
Pig sample Sample description nTPM
Amygdala
nTPM: 250.9
Samples: 4

Max nTPM: 338.9
Min nTPM: 213.9
Sample A Female 338.9
Sample B Female 215.5
Sample C Male 213.9
Sample D Male 235.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

774.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 774.9
Samples: 4

Max nTPM: 830.3
Min nTPM: 739.3
Sample A Male 783.7
Sample B Male 739.3
Sample C Female 830.3
Sample D Female 746.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

26.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 26.1
68563043 Antisense, RP_050125_01_A05, Mouse strain C57BL/6J (56 days, male) 32.3
70302222 Antisense, RP_050607_03_H03, Mouse strain C57BL/6J (56 days, male) 20.0

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