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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
Brain methods
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:463.3 nTPM
FANTOM5:451.6 Scaled Tags Per Million
Pig:296.5 nTPM
Allen mouse:17.3 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

463.3
Sample id Sample description nTPM
Area postrema
nTPM: 270.6
2054 Male, age 76, both hemispheres 339.4
2799 Male, age 61, both hemispheres 255.4
2306 Male, age 80, both hemispheres 216.9
Dorsal medullary reticular nucleus
nTPM: 388.0
2040 Female, age 85, both hemispheres 466.8
2088 Male, age 76, both hemispheres 348.9
2373 Male, age 61, both hemispheres 348.2
Dorsal motor vagal complex
nTPM: 414.8
2133 Female, age 91, both hemispheres 495.7
2844 Male, age 55, unknown 479.5
2813 Female, age 72, unknown 464.7
2643 Male, age 74, both hemispheres 464.3
2000 Male, age 74, unknown 448.5
2797 Male, age 61, both hemispheres 392.9
2185 Male, age 76, both hemispheres 297.5
2807 Female, age 85, both hemispheres 275.2
Gigantocellular reticular nuclei, medullary
nTPM: 391.9
2462 Male, age 74, both hemispheres 520.7
2022 Male, age 76, right hemisphere 456.4
1876 Female, age 85, both hemispheres 398.1
2310 Male, age 80, both hemispheres 343.1
2387 Female, age 91, both hemispheres 322.7
2314 Male, age 61, both hemispheres 310.3
Gigantocellular reticular nuclei, pars
nTPM: 390.9
2168 Male, age 76, both hemispheres 537.3
2084 Female, age 85, both hemispheres 409.9
2336 Male, age 61, both hemispheres 408.6
2706 Male, age 80, both hemispheres 311.0
2330 Male, age 80, both hemispheres 287.6
Inferior olive
nTPM: 329.9
2563 Male, age 74, both hemispheres 411.8
2628 Female, age 91, both hemispheres 385.3
2085 Female, age 85, both hemispheres 338.1
2178 Male, age 61, both hemispheres 270.5
2379 Male, age 80, both hemispheres 243.8
Lateral medullary reticular nucleus
nTPM: 355.2
2044 Male, age 76, both hemispheres 450.0
2804 Female, age 91, both hemispheres 433.8
2374 Male, age 61, both hemispheres 352.8
2190 Female, age 85, both hemispheres 326.3
2305 Male, age 74, both hemispheres 286.7
2852 Male, age 80, both hemispheres 281.6
Medial olivary nucleus
nTPM: 269.7
2138 Female, age 91, both hemispheres 352.7
2851 Male, age 80, both hemispheres 269.0
1962 Male, age 76, both hemispheres 251.2
1943 Male, age 61, both hemispheres 206.0
Medial vestibular nucleus
nTPM: 423.6
2803 Female, age 91, both hemispheres 470.5
2093 Male, age 80, both hemispheres 452.7
2801 Male, age 74, both hemispheres 431.1
2134 Male, age 76, both hemispheres 407.3
2743 Female, age 85, both hemispheres 396.4
2624 Male, age 61, both hemispheres 383.9
Motor hypoglossal nucleus
nTPM: 410.5
2125 Female, age 91, both hemispheres 483.4
2461 Male, age 61, both hemispheres 447.9
2132 Female, age 85, both hemispheres 433.2
2277 Male, age 76, both hemispheres 351.5
2182 Male, age 80, both hemispheres 336.5
Nucleus ambiguus
nTPM: 401.5
2096 Female, age 85, both hemispheres 518.8
2071 Male, age 76, both hemispheres 284.1
Nucleus cuneatus
nTPM: 330.9
2564 Male, age 74, both hemispheres 425.3
2805 Female, age 91, both hemispheres 388.6
2562 Male, age 61, both hemispheres 388.3
2131 Male, age 76, both hemispheres 372.0
2100 Male, age 76, both hemispheres 337.9
2376 Male, age 61, both hemispheres 309.1
2381 Male, age 80, both hemispheres 303.1
2380 Male, age 80, both hemispheres 229.2
2808 Female, age 85, both hemispheres 225.0
Nucleus gracilis
nTPM: 270.9
2627 Male, age 74, both hemispheres 379.6
2382 Male, age 80, both hemispheres 231.7
2299 Female, age 85, both hemispheres 201.4
Nucleus raphe obscurus
nTPM: 315.7
2800 Male, age 61, midline 382.8
2845 Female, age 85, midline 350.4
2142 Male, age 76, midline 213.8
Nucleus raphe pallidus
nTPM: 303.8
2183 Male, age 80, midline 376.2
1924 Male, age 61, midline 310.8
2145 Male, age 76, midline 224.6
Nucleus tractus solitarii
nTPM: 335.7
2656 Male, age 76, both hemispheres 438.4
2144 Female, age 91, right hemisphere 347.5
2307 Male, age 80, both hemispheres 294.5
2191 Female, age 85, both hemispheres 262.4
Parvicellular reticular nuclei
nTPM: 394.5
2558 Male, age 74, both hemispheres 458.4
2095 Male, age 76, both hemispheres 367.6
2119 Male, age 80, both hemispheres 357.6
Parvicellular reticular nuclei, medullary
nTPM: 440.5
2189 Female, age 91, both hemispheres 466.6
2181 Male, age 80, left hemisphere 451.4
2091 Female, age 85, both hemispheres 403.5
Peritrigeminal nucleus
nTPM: 397.6
2179 Male, age 61, both hemispheres 417.8
2067 Female, age 85, both hemispheres 391.7
2136 Male, age 76, both hemispheres 383.4
Prepositus hypoglossal nucleus
nTPM: 369.1
2855 Female, age 85, right hemisphere 388.6
2086 Male, age 80, both hemispheres 349.6
Spinal trigeminal nucleus, caudal
nTPM: 387.6
2390 Female, age 91, both hemispheres 484.3
2642 Male, age 74, both hemispheres 420.3
2447 Male, age 76, both hemispheres 389.3
2308 Male, age 80, both hemispheres 326.0
2312 Male, age 61, both hemispheres 318.3
Spinal trigeminal nucleus, interpolar
nTPM: 463.3
2066 Male, age 76, right hemisphere 523.9
2625 Male, age 61, both hemispheres 485.6
2386 Female, age 85, both hemispheres 439.1
2033 Male, age 80, both hemispheres 435.4
2389 Female, age 91, both hemispheres 432.7
Spinal vestibular nucleus
nTPM: 421.9
2186 Female, age 91, both hemispheres 477.1
2780 Male, age 80, both hemispheres 471.5
2806 Female, age 85, both hemispheres 418.7
2796 Male, age 61, both hemispheres 400.2
2748 Male, age 76, both hemispheres 384.8
2384 Male, age 74, both hemispheres 379.0
Superior vestibular nucleus
nTPM: 354.1
2015 Male, age 80, both hemispheres 389.9
2061 Male, age 76, both hemispheres 344.4
2383 Male, age 74, both hemispheres 328.0
Ventral medullary reticular nucleus
nTPM: 371.0
2060 Male, age 76, both hemispheres 406.8
2372 Male, age 61, both hemispheres 335.2
Ventrolateral medulla, A1-C1 cell groups
nTPM: 370.9
1986 Male, age 76, both hemispheres 416.0
2741 Female, age 85, both hemispheres 414.9
2302 Female, age 91, both hemispheres 386.8
2180 Male, age 61, both hemispheres 371.3
2118 Male, age 80, both hemispheres 265.6

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

451.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 451.6
FF:10038-101F2 18-64 years, mixed 544.4
FF:10174-103C3 60 years, female 420.2
FF:10155-103A2 76 years, female 390.1

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

296.5
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 296.6
Samples: 4

Max nTPM: 335.3
Min nTPM: 227.8
Sample A Female 318.7
Sample B Female 335.3
Sample C Male 304.4
Sample D Male 227.8

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

17.3
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 17.3
68563043 Antisense, RP_050125_01_A05, Mouse strain C57BL/6J (56 days, male) 19.9
70302222 Antisense, RP_050607_03_H03, Mouse strain C57BL/6J (56 days, male) 14.7

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