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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:302.3 nTPM
HPA Brain:425.9 nTPM
GTEx:302.3 nTPM
FANTOM5:376.3 Scaled Tags Per Million
Pig:199.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

425.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 375.7
2565 Male, age 75, midline 430.0
2194 Female, age 79, both hemispheres 421.7
1981 Female, age 72, midline 401.1
2816 Male, age 47, midline 317.3
2048 Male, age 55, midline 308.2
Cervical spinal cord, dorsal horn
nTPM: 425.9
2297 Male, age 75, both hemispheres 503.1
2069 Male, age 47, both hemispheres 447.6
2721 Male, age 90, both hemispheres 434.1
1877 Male, age 55, unknown 423.9
2173 Female, age 72, unknown 410.8
2296 Male, age 66, both hemispheres 336.0
Cervical spinal cord, ventral horn
nTPM: 404.5
2480 Male, age 75, both hemispheres 483.9
2295 Male, age 66, both hemispheres 417.9
2068 Male, age 55, unknown 416.7
2820 Female, age 79, both hemispheres 401.6
2809 Male, age 90, both hemispheres 378.2
2098 Female, age 72, unknown 328.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

302.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 302.3
Samples: 204

Max nTPM: 488.0
Min nTPM: 149.7
Std nTPM: 67.4
Median nTPM: 290.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 488.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 484.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 478.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 475.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 472.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 470.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 461.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 459.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 451.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 445.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 443.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 434.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 432.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 428.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 420.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 415.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 414.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 414.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 408.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 407.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 392.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 387.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 382.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 382.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 380.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 374.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 373.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 373.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 365.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 364.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 361.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 361.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 356.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 356.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 355.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 354.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 354.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 353.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 353.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 352.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 350.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 350.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 347.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 346.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 345.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 344.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 344.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 344.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 344.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 343.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 343.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 342.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 342.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 342.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 340.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 338.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 337.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 337.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 336.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 335.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 334.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 333.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 333.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 333.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 329.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 329.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 328.6
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 325.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 323.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 322.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 321.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 319.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 319.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 319.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 316.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 313.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 312.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 312.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 311.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 309.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 309.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 308.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 307.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 306.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 305.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 304.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 304.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 303.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 303.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 302.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 301.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 300.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 299.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 298.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 297.4
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 295.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 294.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 293.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 293.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 292.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 291.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 290.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 289.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 289.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 288.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 288.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 288.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 287.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 285.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 285.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 284.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 282.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 282.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 281.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 281.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 280.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 280.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 279.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 279.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 279.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 279.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 279.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 278.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 278.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 276.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 276.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 274.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 274.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 274.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 272.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 270.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 270.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 270.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 269.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 269.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 268.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 268.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 267.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 266.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 266.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 265.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 265.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 264.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 264.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 261.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 261.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 261.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 261.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 261.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 260.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 260.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 259.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 259.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 259.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 259.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 257.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 257.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 256.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 254.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 253.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 252.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 250.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 250.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 249.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 248.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 245.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 245.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 243.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 242.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 240.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 238.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 237.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 235.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 235.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 235.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 234.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 233.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 231.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 229.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 228.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 228.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 227.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 226.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 225.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 224.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 219.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 217.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 217.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 214.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 212.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 211.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 211.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 210.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 209.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 203.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 203.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 203.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 200.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 198.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 185.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 183.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 171.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 166.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 149.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

376.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 376.3
FF:10181-103D1 60 years, female 427.9
FF:10159-103A6 76 years, female 324.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

199.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 195.5
Samples: 4

Max nTPM: 278.2
Min nTPM: 118.4
Sample A Female 278.2
Sample B Female 143.3
Sample C Male 118.4
Sample D Male 242.0
Ventral spinal cord
nTPM: 199.0
Samples: 4

Max nTPM: 218.7
Min nTPM: 163.6
Sample A Female 199.0
Sample B Female 218.7
Sample C Male 214.5
Sample D Male 163.6

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