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  • ANAPC13
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:56.2 nTPM
HPA Brain:39.5 nTPM
GTEx:56.2 nTPM
FANTOM5:25.4 Scaled Tags Per Million
Pig:113.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 37.0
1981 Female, age 72, midline 47.4
2048 Male, age 55, midline 39.9
2194 Female, age 79, both hemispheres 37.1
2565 Male, age 75, midline 30.7
2816 Male, age 47, midline 30.0
Cervical spinal cord, dorsal horn
nTPM: 39.5
2173 Female, age 72, unknown 56.5
2069 Male, age 47, both hemispheres 42.3
2296 Male, age 66, both hemispheres 41.5
2721 Male, age 90, both hemispheres 32.3
2297 Male, age 75, both hemispheres 32.2
1877 Male, age 55, unknown 32.0
Cervical spinal cord, ventral horn
nTPM: 38.0
2098 Female, age 72, unknown 49.6
2295 Male, age 66, both hemispheres 40.1
2068 Male, age 55, unknown 36.2
2809 Male, age 90, both hemispheres 35.9
2480 Male, age 75, both hemispheres 34.1
2820 Female, age 79, both hemispheres 32.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

56.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 56.2
Samples: 204

Max nTPM: 99.7
Min nTPM: 30.7
Std nTPM: 11.6
Median nTPM: 55.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 99.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 87.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 84.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 84.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 82.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 80.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 80.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 80.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 80.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 79.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 79.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 79.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 78.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 77.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 76.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 75.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 75.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 74.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 74.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 73.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 72.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 72.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 70.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 70.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 69.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 68.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 67.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 67.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 66.7
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 66.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 66.5
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 66.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 66.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 65.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 65.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 64.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 64.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 64.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 63.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 63.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 63.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 63.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 63.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 63.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 63.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 63.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 63.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 63.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 63.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 62.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 62.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 62.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 62.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 62.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 62.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 61.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 61.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 61.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 61.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 61.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 60.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 60.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 60.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 60.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 60.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 60.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 60.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 60.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 59.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 59.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 59.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 59.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 59.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 59.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 59.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 59.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 59.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 59.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 58.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 58.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 58.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 58.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 58.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 58.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 57.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 57.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 57.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 57.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 57.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 57.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 57.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 57.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 56.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 56.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 56.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 56.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 55.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 55.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 55.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 55.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 55.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 55.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 55.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 55.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 55.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 54.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 54.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 54.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 54.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 54.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 54.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 54.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 54.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 54.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 54.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 53.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 53.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 53.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 53.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 53.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 53.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 53.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 53.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 53.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 53.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 52.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 52.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 52.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 52.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 52.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 52.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 52.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 52.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 51.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 51.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 51.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 50.6
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 50.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 50.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 49.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 49.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 49.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 49.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 49.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 49.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 49.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 49.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 48.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 48.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 48.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 48.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 48.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 48.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 48.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 48.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 48.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 48.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 48.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 48.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 47.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 47.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 47.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 46.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 46.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 46.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 46.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 45.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 45.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 45.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 45.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 45.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 45.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 44.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 44.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 44.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 44.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 44.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 43.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 42.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 42.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 42.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 41.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 41.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 41.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 41.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 41.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 40.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 40.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 40.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 40.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 39.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 39.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 39.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 39.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 38.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 38.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 37.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 37.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 36.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 36.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 36.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 34.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 31.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 30.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

25.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 25.4
FF:10181-103D1 60 years, female 27.9
FF:10159-103A6 76 years, female 22.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 104.7
Samples: 4

Max nTPM: 116.7
Min nTPM: 93.4
Sample A Female 99.2
Sample B Female 109.6
Sample C Male 116.7
Sample D Male 93.4
Ventral spinal cord
nTPM: 113.6
Samples: 4

Max nTPM: 127.0
Min nTPM: 102.0
Sample A Female 102.0
Sample B Female 127.0
Sample C Male 116.2
Sample D Male 109.0

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