MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.8 nTPM
HPA Brain:41.0 nTPM
GTEx:73.8 nTPM
FANTOM5:20.5 Scaled Tags Per Million
Pig:104.5 nTPM
Mouse:85.8 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 41.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.7
1870 Female, age 42, unknown 37.0
2411 Female, age 72, unknown 36.2
2019 Male, age 18, unknown 32.8
1827 Male, age 72, unknown 32.4
1833 Male, age 53, unknown 32.0
2219 Male, age 76, both hemispheres 29.6
1830 Male, age 51, unknown 29.0
2666 Male, age 74, left hemisphere 28.7
2828 Female, age 72, unknown 24.4
2586 Male, age 75, left hemisphere 24.3
Dorsal raphe nucleus
nTPM: 38.0
1828 Male, age 53, unknown 43.3
2298 Female, age 72, unknown 41.0
2047 Male, age 72, unknown 38.8
2016 Female, age 72, unknown 35.2
2750 Male, age 76, both hemispheres 31.9
Inferior colliculus
nTPM: 33.3
1848 Female, age 42, unknown 36.2
2097 Female, age 72, unknown 35.6
1890 Male, age 53, unknown 33.1
2849 Male, age 72, unknown 28.3
Median raphe nucleus
nTPM: 35.4
2220 Male, age 76, midline 35.4
Periaquaductal grey, anterior
nTPM: 34.9
1947 Male, age 18, unknown 38.9
2502 Female, age 75, unknown 35.9
1795 Male, age 51, unknown 29.9
Periaquaductal grey, dorsal
nTPM: 31.4
1840 Male, age 53, unknown 33.8
2850 Male, age 76, both hemispheres 32.4
1831 Male, age 72, unknown 30.6
2464 Female, age 72, unknown 28.7
Periaquaductal grey, lateral
nTPM: 31.2
2272 Male, age 74, both hemispheres 34.4
2053 Male, age 18, unknown 31.1
2140 Male, age 76, both hemispheres 28.1
Pretectal area
nTPM: 31.5
2224 Female, age 72, unknown 41.1
2273 Male, age 74, both hemispheres 35.4
2007 Male, age 72, unknown 33.8
2667 Female, age 75, unknown 32.8
1944 Female, age 72, unknown 32.7
1816 Male, age 51, unknown 31.8
1817 Female, age 42, unknown 31.0
2825 Male, age 18, unknown 30.1
1815 Male, age 53, unknown 28.7
2316 Male, age 76, right hemisphere 27.0
2407 Male, age 75, both hemispheres 21.8
Red nucleus
nTPM: 29.0
1821 Female, age 72, unknown 42.4
1954 Female, age 42, unknown 31.5
2823 Male, age 76, right hemisphere 29.8
2725 Female, age 75, unknown 29.7
1865 Male, age 51, unknown 28.4
2503 Female, age 72, unknown 28.4
1904 Male, age 53, unknown 27.8
2769 Male, age 72, unknown 27.7
2227 Male, age 72, unknown 27.6
2584 Male, age 75, left hemisphere 26.9
2785 Male, age 18, unknown 25.0
2588 Male, age 74, left hemisphere 22.3
Substantia nigra
nTPM: 41.0
2241 Male, age 72, unknown 55.8
1916 Female, age 42, unknown 54.6
1851 Male, age 51, unknown 46.5
2699 Male, age 18, unknown 41.5
2409 Female, age 72, unknown 38.8
1889 Female, age 72, unknown 37.8
1941 Male, age 53, unknown 36.7
2665 Male, age 74, both hemispheres 35.7
2590 Female, age 75, unknown 34.1
2583 Male, age 75, right hemisphere 28.0
Superior colliculus
nTPM: 28.3
1895 Male, age 76, right hemisphere 35.0
2587 Male, age 74, left hemisphere 34.2
1839 Male, age 51, unknown 30.9
2668 Female, age 75, unknown 29.4
1796 Male, age 53, unknown 28.5
2087 Female, age 72, unknown 27.0
2261 Male, age 18, unknown 26.4
2664 Male, age 75, both hemispheres 26.2
1913 Female, age 42, unknown 24.0
1995 Male, age 72, unknown 21.8
Ventral tegmental area
nTPM: 39.0
1915 Female, age 42, unknown 46.9
2410 Female, age 72, unknown 45.5
2218 Male, age 76, both hemispheres 38.5
1942 Male, age 51, unknown 36.4
2021 Male, age 53, unknown 35.7
2223 Female, age 72, unknown 31.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 73.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.8
Samples: 183

Max nTPM: 164.6
Min nTPM: 29.9
Std nTPM: 23.6
Median nTPM: 71.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 164.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 156.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 134.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 133.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 132.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 129.4
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 120.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 117.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 116.6
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 114.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 112.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.5
FF:10158-103A5 76 years, female 20.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 104.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 96.9
Samples: 4

Max nTPM: 131.1
Min nTPM: 63.6
Sample A Female 131.1
Sample B Female 89.5
Sample C Male 103.4
Sample D Male 63.6
Midbrain
nTPM: 96.9
Samples: 4

Max nTPM: 119.0
Min nTPM: 77.9
Sample A Female 119.0
Sample B Female 112.8
Sample C Male 77.9
Sample D Male 78.0
Periaqueductal gray
nTPM: 96.3
Samples: 3

Max nTPM: 105.8
Min nTPM: 91.0
Sample B Female 92.2
Sample C Male 105.8
Sample D Male 91.0
Superior colliculi
nTPM: 104.5
Samples: 4

Max nTPM: 126.4
Min nTPM: 89.6
Sample A Female 126.4
Sample B Female 93.0
Sample C Male 109.0
Sample D Male 89.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 85.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.9
Samples: 4

Max nTPM: 98.8
Min nTPM: 79.8
Sample A Male 98.8
Sample B Male 81.3
Sample C Female 79.8
Sample D Female 83.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68744773 Antisense, RP_050208_01_F04, Mouse strain C57BL/6J (56 days, male) 0.4

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