MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.4 nTPM
HPA Brain:43.8 nTPM
GTEx:25.4 nTPM
FANTOM5:62.1 Scaled Tags Per Million
Pig:3.1 nTPM
Mouse:6.8 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 43.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.6
2019 Male, age 18, unknown 45.1
1870 Female, age 42, unknown 42.4
2828 Female, age 72, unknown 41.2
1827 Male, age 72, unknown 39.8
1830 Male, age 51, unknown 39.1
1833 Male, age 53, unknown 38.4
2586 Male, age 75, left hemisphere 36.9
2411 Female, age 72, unknown 35.2
2666 Male, age 74, left hemisphere 32.8
2219 Male, age 76, both hemispheres 25.1
Dorsal raphe nucleus
nTPM: 37.5
2298 Female, age 72, unknown 41.4
2016 Female, age 72, unknown 41.3
2750 Male, age 76, both hemispheres 38.0
1828 Male, age 53, unknown 35.6
2047 Male, age 72, unknown 31.0
Inferior colliculus
nTPM: 36.6
2097 Female, age 72, unknown 40.0
1848 Female, age 42, unknown 36.4
1890 Male, age 53, unknown 35.8
2849 Male, age 72, unknown 34.0
Median raphe nucleus
nTPM: 32.7
2220 Male, age 76, midline 32.7
Periaquaductal grey, anterior
nTPM: 36.5
2502 Female, age 75, unknown 40.4
1795 Male, age 51, unknown 36.7
1947 Male, age 18, unknown 32.5
Periaquaductal grey, dorsal
nTPM: 32.1
2850 Male, age 76, both hemispheres 34.5
1831 Male, age 72, unknown 34.3
1840 Male, age 53, unknown 30.2
2464 Female, age 72, unknown 29.3
Periaquaductal grey, lateral
nTPM: 37.9
2272 Male, age 74, both hemispheres 41.9
2053 Male, age 18, unknown 35.8
2140 Male, age 76, both hemispheres 35.8
Pretectal area
nTPM: 37.9
2007 Male, age 72, unknown 43.2
1817 Female, age 42, unknown 41.5
2273 Male, age 74, both hemispheres 41.4
1815 Male, age 53, unknown 40.5
1816 Male, age 51, unknown 39.0
2667 Female, age 75, unknown 37.2
2825 Male, age 18, unknown 36.4
2224 Female, age 72, unknown 36.0
2407 Male, age 75, both hemispheres 35.2
1944 Female, age 72, unknown 34.6
2316 Male, age 76, right hemisphere 31.4
Red nucleus
nTPM: 43.8
2769 Male, age 72, unknown 49.1
1954 Female, age 42, unknown 48.4
1821 Female, age 72, unknown 47.0
1904 Male, age 53, unknown 46.4
2227 Male, age 72, unknown 45.6
1865 Male, age 51, unknown 45.4
2503 Female, age 72, unknown 44.0
2785 Male, age 18, unknown 41.2
2823 Male, age 76, right hemisphere 41.0
2725 Female, age 75, unknown 40.5
2588 Male, age 74, left hemisphere 38.9
2584 Male, age 75, left hemisphere 37.8
Substantia nigra
nTPM: 35.7
1916 Female, age 42, unknown 38.5
2583 Male, age 75, right hemisphere 38.2
2590 Female, age 75, unknown 37.7
2699 Male, age 18, unknown 37.0
2409 Female, age 72, unknown 36.5
1851 Male, age 51, unknown 36.2
2665 Male, age 74, both hemispheres 36.1
1889 Female, age 72, unknown 35.1
1941 Male, age 53, unknown 35.0
2241 Male, age 72, unknown 26.4
Superior colliculus
nTPM: 38.3
1995 Male, age 72, unknown 42.5
2587 Male, age 74, left hemisphere 42.2
1913 Female, age 42, unknown 40.6
1796 Male, age 53, unknown 40.2
2664 Male, age 75, both hemispheres 39.6
2261 Male, age 18, unknown 39.1
2087 Female, age 72, unknown 38.4
2668 Female, age 75, unknown 35.4
1839 Male, age 51, unknown 33.8
1895 Male, age 76, right hemisphere 31.5
Ventral tegmental area
nTPM: 35.5
2223 Female, age 72, unknown 38.8
2410 Female, age 72, unknown 38.8
1915 Female, age 42, unknown 36.8
1942 Male, age 51, unknown 34.4
2021 Male, age 53, unknown 32.6
2218 Male, age 76, both hemispheres 31.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 25.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.4
Samples: 183

Max nTPM: 49.1
Min nTPM: 9.7
Std nTPM: 6.1
Median nTPM: 24.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 49.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 44.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 42.1
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 40.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 38.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 38.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 38.0
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 37.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 37.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 36.7
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 36.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 62.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.1
FF:10158-103A5 76 years, female 62.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 3.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2.6
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.0
Sample A Female 2.6
Sample B Female 3.1
Sample C Male 2.0
Sample D Male 2.6
Midbrain
nTPM: 2.4
Samples: 4

Max nTPM: 3.6
Min nTPM: 1.5
Sample A Female 3.6
Sample B Female 2.9
Sample C Male 1.5
Sample D Male 1.7
Periaqueductal gray
nTPM: 2.8
Samples: 3

Max nTPM: 2.9
Min nTPM: 2.6
Sample B Female 2.8
Sample C Male 2.6
Sample D Male 2.9
Superior colliculi
nTPM: 3.1
Samples: 4

Max nTPM: 5.3
Min nTPM: 1.7
Sample A Female 3.5
Sample B Female 5.3
Sample C Male 1.9
Sample D Male 1.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.8
Samples: 4

Max nTPM: 12.4
Min nTPM: 4.6
Sample A Male 12.4
Sample B Male 5.1
Sample C Female 4.6
Sample D Female 5.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
72002107 Antisense, RP_050915_02_G02, Mouse strain C57BL/6J (56 days, male) 0.1
74635635 Antisense, RP_060215_04_B03, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo