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  • DAD1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:181.5 nTPM
HPA Brain:110.4 nTPM
GTEx:181.5 nTPM
FANTOM5:102.1 Scaled Tags Per Million
Pig:51.6 nTPM
Mouse:147.8 nTPM
Allen mouse:2.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.4
Sample id Sample description nTPM
Amygdala
nTPM: 110.4
2514 Male, age 75, right hemisphere 127.0
2814 Male, age 76, right hemisphere 124.5
1987 Female, age 91, left hemisphere 111.6
2695 Female, age 67, right hemisphere 111.3
2517 Female, age 94, left hemisphere 77.6
Basal amygdala
nTPM: 81.5
2609 Male, age 75, right hemisphere 105.1
2110 Male, age 80, left hemisphere 100.8
1955 Male, age 76, both hemispheres 85.7
2243 Female, age 91, right hemisphere 78.0
2685 Female, age 94, left hemisphere 66.2
2827 Female, age 67, right hemisphere 53.3
Central amygdala
nTPM: 89.2
1905 Male, age 76, both hemispheres 105.3
2515 Male, age 75, right hemisphere 98.3
2239 Male, age 80, left hemisphere 85.5
2701 Female, age 91, right hemisphere 83.7
2826 Female, age 94, left hemisphere 73.1
Corticomedial amygdala
nTPM: 82.9
2428 Male, age 75, right hemisphere 102.5
2829 Male, age 80, left hemisphere 91.1
2242 Female, age 91, right hemisphere 86.3
2429 Female, age 94, left hemisphere 81.0
2240 Male, age 76, both hemispheres 80.6
2535 Female, age 67, right hemisphere 55.6
Lateral amygdala
nTPM: 82.8
1883 Male, age 76, both hemispheres 109.2
2516 Male, age 75, right hemisphere 103.1
2256 Male, age 80, left hemisphere 82.8
2830 Female, age 67, right hemisphere 67.8
2255 Female, age 91, right hemisphere 67.5
2534 Female, age 94, left hemisphere 66.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 181.5
Samples: 181

Max nTPM: 426.1
Min nTPM: 102.6
Std nTPM: 51.4
Median nTPM: 171.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 426.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 391.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 376.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 349.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 321.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 306.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 290.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 280.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 277.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 271.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 267.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 260.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 253.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 249.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 248.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 243.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 242.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 242.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 240.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 239.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 239.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 231.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 231.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 230.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 228.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 226.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 225.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 220.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 218.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 218.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 216.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 216.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 214.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 213.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 212.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 212.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 211.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 210.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 209.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 209.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 208.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 207.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 206.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 206.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 204.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 204.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 202.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 202.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 200.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 199.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 198.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 198.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 198.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 198.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 197.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 196.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 196.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 196.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 196.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 195.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 195.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 194.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 193.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 193.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 191.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 190.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 188.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 188.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 186.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 186.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 185.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 185.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 183.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 182.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 181.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 179.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 179.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 179.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 179.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 178.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 176.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 176.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 176.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 176.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 175.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 174.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 174.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 174.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 173.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 172.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 171.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 171.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 170.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 168.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 168.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 167.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 167.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 166.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 165.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 164.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 164.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 164.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 163.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 163.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 162.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 162.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 162.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 160.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 159.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 159.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 158.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 157.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 156.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 156.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 155.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 155.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 154.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 154.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 154.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 153.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 153.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 153.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 153.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 153.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 152.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 151.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 151.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 151.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 151.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 151.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 151.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 150.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 150.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 150.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 149.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 148.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 148.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 148.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 147.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 145.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 145.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 144.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 144.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 144.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 143.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 143.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 142.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 141.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 140.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 140.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 140.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 137.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 136.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 135.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 135.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 135.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 135.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 135.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 133.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 133.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 132.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 132.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 132.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 128.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 127.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 127.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 126.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 125.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 125.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 123.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 123.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 121.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 119.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 118.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 114.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 111.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 110.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 106.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 103.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 102.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 102.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

102.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 102.1
FF:10151-102I7 76 years, female 102.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.6
Pig sample Sample description nTPM
Amygdala
nTPM: 51.6
Samples: 4

Max nTPM: 56.8
Min nTPM: 45.3
Sample A Female 56.8
Sample B Female 50.6
Sample C Male 53.5
Sample D Male 45.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 147.8
Samples: 4

Max nTPM: 160.4
Min nTPM: 143.0
Sample A Male 143.7
Sample B Male 143.0
Sample C Female 160.4
Sample D Female 144.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.5
69838004 Antisense, RP_050224_01_E09, Mouse strain C57BL/6J (56 days, male) 4.0
74819345 Antisense, RP_060315_02_E12, Mouse strain C57BL/6J (56 days, male) 1.0

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