MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:208.8 nTPM
HPA Brain:132.6 nTPM
GTEx:208.8 nTPM
FANTOM5:181.3 Scaled Tags Per Million
Pig:84.6 nTPM
Mouse:140.4 nTPM
Allen mouse:2.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 132.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 102.7
1870 Female, age 42, unknown 131.7
2019 Male, age 18, unknown 121.5
1833 Male, age 53, unknown 112.8
2411 Female, age 72, unknown 112.2
2828 Female, age 72, unknown 108.3
1830 Male, age 51, unknown 107.1
1827 Male, age 72, unknown 95.1
2666 Male, age 74, left hemisphere 88.0
2219 Male, age 76, both hemispheres 81.6
2586 Male, age 75, left hemisphere 68.7
Dorsal raphe nucleus
nTPM: 132.6
2298 Female, age 72, unknown 147.0
2750 Male, age 76, both hemispheres 136.8
2016 Female, age 72, unknown 129.7
1828 Male, age 53, unknown 127.3
2047 Male, age 72, unknown 122.5
Inferior colliculus
nTPM: 94.6
2097 Female, age 72, unknown 99.1
1848 Female, age 42, unknown 95.3
1890 Male, age 53, unknown 94.1
2849 Male, age 72, unknown 89.7
Median raphe nucleus
nTPM: 125.4
2220 Male, age 76, midline 125.4
Periaquaductal grey, anterior
nTPM: 96.5
2502 Female, age 75, unknown 98.2
1795 Male, age 51, unknown 95.9
1947 Male, age 18, unknown 95.5
Periaquaductal grey, dorsal
nTPM: 107.1
2850 Male, age 76, both hemispheres 137.6
1831 Male, age 72, unknown 104.2
1840 Male, age 53, unknown 99.2
2464 Female, age 72, unknown 87.3
Periaquaductal grey, lateral
nTPM: 113.1
2272 Male, age 74, both hemispheres 116.8
2140 Male, age 76, both hemispheres 114.1
2053 Male, age 18, unknown 108.5
Pretectal area
nTPM: 113.1
2273 Male, age 74, both hemispheres 138.1
2667 Female, age 75, unknown 127.1
2224 Female, age 72, unknown 125.5
1817 Female, age 42, unknown 124.8
1815 Male, age 53, unknown 119.7
2316 Male, age 76, right hemisphere 118.2
2407 Male, age 75, both hemispheres 103.9
2007 Male, age 72, unknown 101.5
2825 Male, age 18, unknown 97.5
1944 Female, age 72, unknown 96.2
1816 Male, age 51, unknown 92.1
Red nucleus
nTPM: 120.0
1821 Female, age 72, unknown 156.5
1865 Male, age 51, unknown 137.0
1904 Male, age 53, unknown 135.1
1954 Female, age 42, unknown 133.5
2823 Male, age 76, right hemisphere 131.9
2227 Male, age 72, unknown 123.0
2769 Male, age 72, unknown 120.6
2503 Female, age 72, unknown 118.8
2785 Male, age 18, unknown 118.3
2725 Female, age 75, unknown 102.8
2588 Male, age 74, left hemisphere 83.5
2584 Male, age 75, left hemisphere 78.5
Substantia nigra
nTPM: 107.8
1851 Male, age 51, unknown 126.5
1916 Female, age 42, unknown 120.4
1889 Female, age 72, unknown 118.1
2699 Male, age 18, unknown 115.6
2409 Female, age 72, unknown 108.9
2241 Male, age 72, unknown 105.1
1941 Male, age 53, unknown 104.6
2590 Female, age 75, unknown 99.6
2665 Male, age 74, both hemispheres 93.5
2583 Male, age 75, right hemisphere 85.5
Superior colliculus
nTPM: 106.5
1995 Male, age 72, unknown 135.6
2587 Male, age 74, left hemisphere 131.6
1913 Female, age 42, unknown 126.6
2668 Female, age 75, unknown 112.3
1895 Male, age 76, right hemisphere 98.6
2261 Male, age 18, unknown 97.7
1839 Male, age 51, unknown 96.9
2087 Female, age 72, unknown 92.2
1796 Male, age 53, unknown 92.1
2664 Male, age 75, both hemispheres 81.2
Ventral tegmental area
nTPM: 119.9
2223 Female, age 72, unknown 133.2
2410 Female, age 72, unknown 129.5
2218 Male, age 76, both hemispheres 118.7
1915 Female, age 42, unknown 115.3
2021 Male, age 53, unknown 113.6
1942 Male, age 51, unknown 109.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 208.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 208.8
Samples: 183

Max nTPM: 438.6
Min nTPM: 109.0
Std nTPM: 53.9
Median nTPM: 197.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 438.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 384.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 377.1
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 350.9
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 327.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 318.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 317.6
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 317.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 316.0
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 311.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 311.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 181.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 181.3
FF:10158-103A5 76 years, female 181.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 84.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 76.2
Samples: 4

Max nTPM: 100.1
Min nTPM: 64.5
Sample A Female 100.1
Sample B Female 66.3
Sample C Male 64.5
Sample D Male 73.9
Midbrain
nTPM: 82.7
Samples: 4

Max nTPM: 117.0
Min nTPM: 54.6
Sample A Female 117.0
Sample B Female 90.0
Sample C Male 54.6
Sample D Male 69.2
Periaqueductal gray
nTPM: 71.5
Samples: 3

Max nTPM: 77.6
Min nTPM: 65.8
Sample B Female 65.8
Sample C Male 71.2
Sample D Male 77.6
Superior colliculi
nTPM: 84.6
Samples: 4

Max nTPM: 96.5
Min nTPM: 75.6
Sample A Female 96.5
Sample B Female 75.6
Sample C Male 88.2
Sample D Male 78.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 140.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 140.4
Samples: 4

Max nTPM: 143.2
Min nTPM: 137.1
Sample A Male 138.3
Sample B Male 137.1
Sample C Female 143.2
Sample D Female 143.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
69838004 Antisense, RP_050224_01_E09, Mouse strain C57BL/6J (56 days, male) 3.1
74819345 Antisense, RP_060315_02_E12, Mouse strain C57BL/6J (56 days, male) 1.2

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