MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:91.1 nTPM
HPA Brain:173.0 nTPM
GTEx:91.1 nTPM
FANTOM5:162.9 Scaled Tags Per Million
Pig:176.1 nTPM
Mouse:318.6 nTPM
Allen mouse:13.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 173.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 138.2
2019 Male, age 18, unknown 170.2
1827 Male, age 72, unknown 162.3
2586 Male, age 75, left hemisphere 160.6
2411 Female, age 72, unknown 153.4
2666 Male, age 74, left hemisphere 137.5
2828 Female, age 72, unknown 132.5
1870 Female, age 42, unknown 130.4
1830 Male, age 51, unknown 113.6
1833 Male, age 53, unknown 112.3
2219 Male, age 76, both hemispheres 109.5
Dorsal raphe nucleus
nTPM: 136.7
2298 Female, age 72, unknown 175.8
2047 Male, age 72, unknown 140.0
1828 Male, age 53, unknown 132.5
2750 Male, age 76, both hemispheres 128.1
2016 Female, age 72, unknown 107.3
Inferior colliculus
nTPM: 134.2
2097 Female, age 72, unknown 163.7
1848 Female, age 42, unknown 136.6
1890 Male, age 53, unknown 122.3
2849 Male, age 72, unknown 114.3
Median raphe nucleus
nTPM: 142.6
2220 Male, age 76, midline 142.6
Periaquaductal grey, anterior
nTPM: 167.9
1947 Male, age 18, unknown 171.2
2502 Female, age 75, unknown 169.6
1795 Male, age 51, unknown 163.0
Periaquaductal grey, dorsal
nTPM: 123.6
1840 Male, age 53, unknown 130.4
1831 Male, age 72, unknown 128.8
2464 Female, age 72, unknown 125.5
2850 Male, age 76, both hemispheres 109.6
Periaquaductal grey, lateral
nTPM: 125.3
2272 Male, age 74, both hemispheres 139.7
2053 Male, age 18, unknown 129.0
2140 Male, age 76, both hemispheres 107.4
Pretectal area
nTPM: 173.0
1816 Male, age 51, unknown 242.6
1944 Female, age 72, unknown 228.2
2007 Male, age 72, unknown 221.7
1817 Female, age 42, unknown 208.4
1815 Male, age 53, unknown 182.8
2667 Female, age 75, unknown 162.3
2273 Male, age 74, both hemispheres 160.7
2224 Female, age 72, unknown 147.8
2407 Male, age 75, both hemispheres 119.8
2825 Male, age 18, unknown 118.7
2316 Male, age 76, right hemisphere 110.2
Red nucleus
nTPM: 118.7
2785 Male, age 18, unknown 153.6
1821 Female, age 72, unknown 137.9
2584 Male, age 75, left hemisphere 128.5
2725 Female, age 75, unknown 127.0
2503 Female, age 72, unknown 122.2
1954 Female, age 42, unknown 117.8
1865 Male, age 51, unknown 110.7
2769 Male, age 72, unknown 107.6
2227 Male, age 72, unknown 107.3
2588 Male, age 74, left hemisphere 106.9
1904 Male, age 53, unknown 104.9
2823 Male, age 76, right hemisphere 99.4
Substantia nigra
nTPM: 139.5
1941 Male, age 53, unknown 194.0
1889 Female, age 72, unknown 188.5
1916 Female, age 42, unknown 152.6
2241 Male, age 72, unknown 142.8
1851 Male, age 51, unknown 140.7
2409 Female, age 72, unknown 129.0
2583 Male, age 75, right hemisphere 125.4
2590 Female, age 75, unknown 115.0
2665 Male, age 74, both hemispheres 113.4
2699 Male, age 18, unknown 93.6
Superior colliculus
nTPM: 147.6
2087 Female, age 72, unknown 187.8
2261 Male, age 18, unknown 174.3
2668 Female, age 75, unknown 163.5
2664 Male, age 75, both hemispheres 154.2
1796 Male, age 53, unknown 153.1
2587 Male, age 74, left hemisphere 138.5
1895 Male, age 76, right hemisphere 132.7
1913 Female, age 42, unknown 130.4
1839 Male, age 51, unknown 128.2
1995 Male, age 72, unknown 113.8
Ventral tegmental area
nTPM: 129.2
2410 Female, age 72, unknown 153.1
1915 Female, age 42, unknown 132.9
2218 Male, age 76, both hemispheres 129.2
1942 Male, age 51, unknown 128.6
2223 Female, age 72, unknown 118.7
2021 Male, age 53, unknown 112.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 91.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 91.1
Samples: 183

Max nTPM: 307.6
Min nTPM: 47.6
Std nTPM: 33.6
Median nTPM: 81.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 307.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 262.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 181.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 174.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 171.0
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 168.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 163.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 161.5
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 158.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 153.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 151.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 162.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 162.9
FF:10158-103A5 76 years, female 162.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 176.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 128.7
Samples: 4

Max nTPM: 155.3
Min nTPM: 100.4
Sample A Female 155.3
Sample B Female 116.4
Sample C Male 142.7
Sample D Male 100.4
Midbrain
nTPM: 150.0
Samples: 4

Max nTPM: 237.4
Min nTPM: 120.1
Sample A Female 120.1
Sample B Female 121.3
Sample C Male 237.4
Sample D Male 121.2
Periaqueductal gray
nTPM: 106.7
Samples: 3

Max nTPM: 116.7
Min nTPM: 98.5
Sample B Female 104.9
Sample C Male 116.7
Sample D Male 98.5
Superior colliculi
nTPM: 176.1
Samples: 4

Max nTPM: 309.4
Min nTPM: 126.4
Sample A Female 126.4
Sample B Female 127.9
Sample C Male 309.4
Sample D Male 140.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 318.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 318.6
Samples: 4

Max nTPM: 324.5
Min nTPM: 306.9
Sample A Male 306.9
Sample B Male 324.5
Sample C Female 319.9
Sample D Female 323.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 13.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.9
2159 Antisense, RP_040324_01_B05, Mouse strain C57BL/6J (56 days, male) 13.9
2160 Antisense, RP_040324_01_B05, Mouse strain C57BL/6J (56 days, male) 10.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo