A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.7
nTPM
Monaco:
167.7
nTPM
Schmiedel:
78.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.7
HPA sample
nTPM
Memory B-cell nTPM: 12.7
Samples: 6
Max nTPM: 22.3
Min nTPM: 4.5
P10809_1017
22.3
P10809_1025
11.9
P10809_1044
4.5
P10809_1063
11.4
P10809_1092
10.9
P10809_1105
15.2
Naive B-cell nTPM: 7.4
Samples: 6
Max nTPM: 14.3
Min nTPM: 0.2
P10809_1011
14.3
P10809_1029
5.0
P10809_1048
0.2
P10809_1067
5.4
P10809_1091
8.6
P10809_1104
10.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
167.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 137.7
Samples: 4
Max nTPM: 159.0
Min nTPM: 106.8
RHH5310_R3677
146.8
RHH5218_R3590
138.3
RHH5247_R3619
106.8
RHH5276_R3648
159.0
Naive B-cell nTPM: 113.6
Samples: 4
Max nTPM: 142.7
Min nTPM: 80.0
RHH5308_R3675
80.0
RHH5216_R3588
142.7
RHH5245_R3617
129.9
RHH5274_R3646
101.6
Non-switched memory B-cell nTPM: 116.1
Samples: 4
Max nTPM: 136.2
Min nTPM: 83.7
RHH5309_R3676
135.7
RHH5217_R3589
108.8
RHH5246_R3618
83.7
RHH5275_R3647
136.2
Plasmablast nTPM: 71.7
Samples: 4
Max nTPM: 90.7
Min nTPM: 54.6
RHH5312_R3679
90.7
RHH5220_R3592
54.6
RHH5249_R3621
69.4
RHH5278_R3650
72.0
Switched memory B-cell nTPM: 167.8
Samples: 4
Max nTPM: 186.2
Min nTPM: 139.3
RHH5311_R3678
162.1
RHH5219_R3591
139.3
RHH5248_R3620
186.2
RHH5277_R3649
183.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
78.3
Schmiedel sample id
TPM
Naive B-cell TPM: 78.3
Samples: 91
Max TPM: 139.6
Min TPM: 15.7
B_CELL_NAIVE_1
139.6
B_CELL_NAIVE_2
136.8
B_CELL_NAIVE_3
135.8
B_CELL_NAIVE_4
135.2
B_CELL_NAIVE_5
130.5
B_CELL_NAIVE_6
127.6
B_CELL_NAIVE_7
123.5
B_CELL_NAIVE_8
123.0
B_CELL_NAIVE_9
121.8
B_CELL_NAIVE_10
120.4
B_CELL_NAIVE_11
120.1
B_CELL_NAIVE_12
119.8
B_CELL_NAIVE_13
119.6
B_CELL_NAIVE_14
117.9
B_CELL_NAIVE_15
115.3
B_CELL_NAIVE_16
112.4
B_CELL_NAIVE_17
111.5
B_CELL_NAIVE_18
108.8
B_CELL_NAIVE_19
107.0
B_CELL_NAIVE_20
107.0
B_CELL_NAIVE_21
104.4
B_CELL_NAIVE_22
103.9
B_CELL_NAIVE_23
101.8
B_CELL_NAIVE_24
101.1
B_CELL_NAIVE_25
98.3
B_CELL_NAIVE_26
97.3
B_CELL_NAIVE_27
95.7
B_CELL_NAIVE_28
95.2
B_CELL_NAIVE_29
95.0
B_CELL_NAIVE_30
94.3
B_CELL_NAIVE_31
94.1
B_CELL_NAIVE_32
93.6
B_CELL_NAIVE_33
92.9
B_CELL_NAIVE_34
89.5
B_CELL_NAIVE_35
89.1
B_CELL_NAIVE_36
89.0
B_CELL_NAIVE_37
89.0
B_CELL_NAIVE_38
85.8
B_CELL_NAIVE_39
85.3
B_CELL_NAIVE_40
84.4
B_CELL_NAIVE_41
83.9
B_CELL_NAIVE_42
82.9
B_CELL_NAIVE_43
81.9
B_CELL_NAIVE_44
80.7
B_CELL_NAIVE_45
80.7
B_CELL_NAIVE_46
80.3
B_CELL_NAIVE_47
78.5
B_CELL_NAIVE_48
77.5
B_CELL_NAIVE_49
75.6
B_CELL_NAIVE_50
74.9
B_CELL_NAIVE_51
74.9
B_CELL_NAIVE_52
74.7
B_CELL_NAIVE_53
74.2
B_CELL_NAIVE_54
71.4
B_CELL_NAIVE_55
69.4
B_CELL_NAIVE_56
69.3
B_CELL_NAIVE_57
69.1
B_CELL_NAIVE_58
68.7
B_CELL_NAIVE_59
68.0
B_CELL_NAIVE_60
66.0
B_CELL_NAIVE_61
65.5
B_CELL_NAIVE_62
63.8
B_CELL_NAIVE_63
63.0
B_CELL_NAIVE_64
58.1
B_CELL_NAIVE_65
57.0
B_CELL_NAIVE_66
56.6
B_CELL_NAIVE_67
55.4
B_CELL_NAIVE_68
54.1
B_CELL_NAIVE_69
51.5
B_CELL_NAIVE_70
51.3
B_CELL_NAIVE_71
51.2
B_CELL_NAIVE_72
50.4
B_CELL_NAIVE_73
50.1
B_CELL_NAIVE_74
49.8
B_CELL_NAIVE_75
49.5
B_CELL_NAIVE_76
47.9
B_CELL_NAIVE_77
45.2
B_CELL_NAIVE_78
43.2
B_CELL_NAIVE_79
38.2
B_CELL_NAIVE_80
34.8
B_CELL_NAIVE_81
33.9
B_CELL_NAIVE_82
31.9
B_CELL_NAIVE_83
31.8
B_CELL_NAIVE_84
27.2
B_CELL_NAIVE_85
26.8
B_CELL_NAIVE_86
26.1
B_CELL_NAIVE_87
23.7
B_CELL_NAIVE_88
18.3
B_CELL_NAIVE_89
17.0
B_CELL_NAIVE_90
16.7
B_CELL_NAIVE_91
15.7
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The Human Protein Atlas project is funded
